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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G605380
Reference: TK1151 Chr: Chr03 Coordinates: 153772692-153774434 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1593 bp · TkA03G605380|TK1151|cDNA

ATGGACTTCGCCGCCGGCGAAGACCAACAACAACCGATTGAACAAATCATATCCGTCCCAATACTTTTATCTGATCGAATCCGTCAAACCGTCGATGATTCGAAAACCTACAAACTTGAGTGTACCGAAGTCGGAAAACTCGTCGACCGTCTTTCTCAGATGCTCCGGTCGTTCGTCCGGTTCACCAACACCGCGCCTTCTTTCTACGACCGCCCCGTCCGCCGTATATACACGAAACTGATTAACCTTCTTGATGCATC...

CDS

Download CDS FASTA

1593 bp · TkA03G605380|TK1151|CDS

ATGGACTTCGCCGCCGGCGAAGACCAACAACAACCGATTGAACAAATCATATCCGTCCCAATACTTTTATCTGATCGAATCCGTCAAACCGTCGATGATTCGAAAACCTACAAACTTGAGTGTACCGAAGTCGGAAAACTCGTCGACCGTCTTTCTCAGATGCTCCGGTCGTTCGTCCGGTTCACCAACACCGCGCCTTCTTTCTACGACCGCCCCGTCCGCCGTATATACACGAAACTGATTAACCTTCTTGATGCATC...

Protein

Download Protein FASTA

530 aa · TkA03G605380|TK1151|PROTEIN

MDFAAGEDQQQPIEQIISVPILLSDRIRQTVDDSKTYKLECTEVGKLVDRLSQMLRSFVRFTNTAPSFYDRPVRRIYTKLINLLDASIGDMKWLLSIFDSGGDYGVVLSLPPIASNDPILAWVWSYISSLHLCPLNVKIEVANGLCSLAHDNDRNKIIIVAEGGIQPLLKLLKEDSSPEAQIAVSTTLFNLANSEDRARLITNELGVPIIVQSFQKSPIRVQISIVKLIARMAENDEVSQEAFARENVIRPLVTLLSFET...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G605380
TK1151 IDTkA03G605380
OH-1004 IDLXL04_011611
Relationship / confidenceRbh Sequence Supported / Probable
Protein identity (%)91.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G605380
LocationChr03:153772692-153774434 (-)
DescriptionProtein of unknown function
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_011611 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)No functional description available
KEGG gene cross-referenceNo functional description available
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.457
Rank 1 · TkA03G605380 · TK1151
Nucleus0.356
Rank 2 · TkA03G605380 · TK1151
Cell membrane0.211
Rank 3 · TkA03G605380 · TK1151
Endoplasmic reticulum0.054
Rank 4 · TkA03G605380 · TK1151
Lysosome / Vacuole0.049
Rank 5 · TkA03G605380 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF25055DUF779214-78 aa
PF25055DUF779278-99 aa
PF25598ARM_PUB145-278 aa
PF00514Arm152-192 aa
PF24768ARM_ARMC5156-348 aa
PF14664RICTOR_N158-222 aa
PF13646HEAT_2165-193 aa
PF13646HEAT_2165-194 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G605380PF25055DUF779214784.3e-2382.4
TkA03G605380PF25055DUF779278994.3e-2382.4
TkA03G605380PF25598ARM_PUB1452786.9e-0626.4
TkA03G605380PF00514Arm1521925.3e-1555.6
TkA03G605380PF24768ARM_ARMC51563481.4e-0732.0
TkA03G605380PF14664RICTOR_N1582220.002817.4
TkA03G605380PF13646HEAT_21651933e-0525.0
TkA03G605380PF13646HEAT_21651943e-0525.0
TkA03G605380PF08324PUL1652450.02714.5
TkA03G605380PF13513HEAT_EZ1651880.07114.4
TkA03G605380PF04826Arm_21652140.1212.5
TkA03G605380PF04826Arm_21812670.1212.5
TkA03G605380PF23628ARM_LIN_C1952670.03114.0
TkA03G605380PF13646HEAT_22202743e-0525.0
TkA03G605380PF13513HEAT_EZ2212610.07114.4
TkA03G605380PF00514Arm2442615.3e-1555.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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