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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G585940
Reference: TK1151 Chr: Chr03 Coordinates: 148834503-148842598 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1414 bp · TkA03G585940|TK1151|cDNA

TTTAAAGAATAATTATAGATTGTTGTGTATCATCTCCTGTTTTCATTGCAAATGAACTTTTGTTTCTGATTTTTCGACAACCGATGGATAGGTGCCCCCAAATTTCCCGCCAAACAAAACTTTAATCGATCGCTTGTAAACGATGCTTAAGAATCTCTGTCAAACCCTAAAATCATTACCCAGGAACCCCAGATCAACGATTTCGGTTTTTCATTTTCACACCCGCAAGAAAACCCTACTCTCCAATCCGGCGATAGATT...

CDS

Download CDS FASTA

1236 bp · TkA03G585940|TK1151|CDS

ATGCTTAAGAATCTCTGTCAAACCCTAAAATCATTACCCAGGAACCCCAGATCAACGATTTCGGTTTTTCATTTTCACACCCGCAAGAAAACCCTACTCTCCAATCCGGCGATAGATTTCATACTGAATGAAATCGCAGACCTCCCATCTTCAAACACCATTAAAACCCCAATACAAGATACACCAAAAACCGCAGAACAAGTTGACGCAGAAACATTGAGTATTGAGAATTTACACCCATGGCCGGAATGGGTTGTGTT...

Protein

Download Protein FASTA

411 aa · TkA03G585940|TK1151|PROTEIN

MLKNLCQTLKSLPRNPRSTISVFHFHTRKKTLLSNPAIDFILNEIADLPSSNTIKTPIQDTPKTAEQVDAETLSIENLHPWPEWVVLMQKLMKNGYLDVVLNPFRNGELIDGKACNQIRTACLNFARDRPDLMSYFTRGDIHAVAGSGCPSIDRKVVNSGKRLRAYIGIDEGNVCSSCDLRGKCERAYVKPHEEEDGRTVDVMRFVLTYGLHHLNHSPDSEPYMNKRLEEAIRSLIGDMVKFSKTELDFDPSKCVPSVYR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G585940
TK1151 IDTkA03G585940
OH-1004 IDLXL04_011386
Relationship / confidenceRbh Sequence Supported / Probable
Protein identity (%)91.400
Protein coverage (%)TK1151 99.757 / OH-1004 88.353
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G585940
LocationChr03:148834503-148842598 (-)
DescriptionSimilar to VAR3: Zinc finger protein VAR3, chloroplastic
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_011386 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006397 mRNA processing Biological Process
GO:0009658 chloroplast organization Biological Process
GO:1900871 chloroplast mRNA modification Biological Process
GO:0005634 nucleus Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0009570 chloroplast stroma Cellular Component
GO:0003729 mRNA binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT5G17790
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.334
Rank 1 · TkA03G585940 · TK1151
Nucleus0.286
Rank 2 · TkA03G585940 · TK1151
Cytoplasm0.191
Rank 3 · TkA03G585940 · TK1151
Mitochondrion0.175
Rank 4 · TkA03G585940 · TK1151
Cell membrane0.057
Rank 5 · TkA03G585940 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF20547DUF676196-131 aa
PF08273Zn_Ribbon_Prim173-179 aa
PF00641Zn_ribbon_RanBP175-178 aa
PF25429zf-POGZ175-190 aa
PF20547DUF6761198-247 aa
PF08273Zn_Ribbon_Prim285-295 aa
PF00641Zn_ribbon_RanBP286-310 aa
PF25429zf-POGZ289-296 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G585940PF20547DUF6761961310.0714.0
TkA03G585940PF08273Zn_Ribbon_Prim1731793.68.7
TkA03G585940PF00641Zn_ribbon_RanBP1751782.3e-1143.5
TkA03G585940PF25429zf-POGZ1751909.97.4
TkA03G585940PF20547DUF67611982470.0714.0
TkA03G585940PF08273Zn_Ribbon_Prim2852953.68.7
TkA03G585940PF00641Zn_ribbon_RanBP2863102.3e-1143.5
TkA03G585940PF25429zf-POGZ2892969.97.4
TkA03G585940PF25429zf-POGZ3023299.97.4
TkA03G585940PF08273Zn_Ribbon_Prim3153273.68.7
TkA03G585940PF00641Zn_ribbon_RanBP3203382.3e-1143.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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