TkA03G584930 | RubberDandelionOmics

Gene overview

TkA03G584930

Reference: TK1151 Chr: Chr03 Coordinates: 148515191-148520865 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

723 bp · TkA03G584930|TK1151|cDNA

ATGTACCCGGAACTGCACCGAGTGGAAAGCGACAAAGATTGCAAGCTGAGAAGAGGGAAAGAAACGAGAGCGGCGGAAATTCTGACCGAGACATTGAAGGACATCATCTTACGGGACAGAAAAGACACTTGGAAATGGACCAGGAGCAGCAATGGTTTGTTCACGGTTAGTAGTCTGAGGCGGAGCATAGCGGACAGTAGGTTAGAGGGCAATTTCGGCAATTTCGAGTGGATAAATTGGGTGCCTCAAAAGGTTCTATG...

CDS

Download CDS FASTA

723 bp · TkA03G584930|TK1151|CDS

ATGTACCCGGAACTGCACCGAGTGGAAAGCGACAAAGATTGCAAGCTGAGAAGAGGGAAAGAAACGAGAGCGGCGGAAATTCTGACCGAGACATTGAAGGACATCATCTTACGGGACAGAAAAGACACTTGGAAATGGACCAGGAGCAGCAATGGTTTGTTCACGGTTAGTAGTCTGAGGCGGAGCATAGCGGACAGTAGGTTAGAGGGCAATTTCGGCAATTTCGAGTGGATAAATTGGGTGCCTCAAAAGGTTCTATG...

Protein

Download Protein FASTA

240 aa · TkA03G584930|TK1151|PROTEIN

MYPELHRVESDKDCKLRRGKETRAAEILTETLKDIILRDRKDTWKWTRSSNGLFTVSSLRRSIADSRLEGNFGNFEWINWVPQKVLCFTWRAALGRLPTADALTRRGISIPSPMCSRCNIELETVDHILFSCPLARSVWLEIWKWCKVDVPVHSSVGDVLAFAASWGRCPKKRYMLLAICYGAFWTIWKMRNDRVFNKRLSSTSRTIDEILSLVFSWFKYRGDLGNCNWVVWCMFPFDCL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G584930`
TK1151 ID	TkA03G584930
OH-1004 ID	LXL04_017163
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	47.300
Protein coverage (%)	TK1151 86.250 / OH-1004 8.953 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID	`TkA03G584930`
Location	Chr03:148515191-148520865 (+)
Description	Similar to Retrovirus-related Pol polyprotein from transposon TNT 1-94
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_017163` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0006310 DNA recombination Biological Process GO:0006508 proteolysis Biological Process GO:0015074 DNA integration Biological Process GO:0003676 nucleic acid binding Molecular Function GO:0003964 RNA-directed DNA polymerase activity Molecular Function GO:0004190 aspartic-type endopeptidase activity Molecular Function GO:0004519 endonuclease activity Molecular Function GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference	No functional description available

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.477

Rank 1 · TkA03G584930 · TK1151

Nucleus0.295

Rank 2 · TkA03G584930 · TK1151

Cell membrane0.170

Rank 3 · TkA03G584930 · TK1151

Golgi apparatus0.082

Rank 4 · TkA03G584930 · TK1151

Lysosome / Vacuole0.067

Rank 5 · TkA03G584930 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13966zf-RVT38-48 aa

PF13966zf-RVT54-139 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G584930	`PF13966`	zf-RVT	38	48	2e-19	70.8
TkA03G584930	`PF13966`	zf-RVT	54	139	2e-19	70.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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