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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G582010
Reference: TK1151 Chr: Chr03 Coordinates: 147757643-147759253 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1530 bp · TkA03G582010|TK1151|cDNA

ATGGCGTTCTCGCAAATTCTCAAGCGTTCAACAAGAACACCCGAGACTTTCCGCTCTTCAGTTCATTCGTCATCATCATCCCCATCAATCACCGTTAGACTTCATATTCATCCCAGAAGTTTCTGCAACAAAATCATCGATAACGCAGATGCATATAGCCCCCAAGTCATCACCGACGCAGAAAAACTCTGCAAAATGATCTCAACTCATCGTGATACATCACAACTAGACTCATTGTTGAACTCCACTGAAATTGAACT...

CDS

Download CDS FASTA

1530 bp · TkA03G582010|TK1151|CDS

ATGGCGTTCTCGCAAATTCTCAAGCGTTCAACAAGAACACCCGAGACTTTCCGCTCTTCAGTTCATTCGTCATCATCATCCCCATCAATCACCGTTAGACTTCATATTCATCCCAGAAGTTTCTGCAACAAAATCATCGATAACGCAGATGCATATAGCCCCCAAGTCATCACCGACGCAGAAAAACTCTGCAAAATGATCTCAACTCATCGTGATACATCACAACTAGACTCATTGTTGAACTCCACTGAAATTGAACT...

Protein

Download Protein FASTA

509 aa · TkA03G582010|TK1151|PROTEIN

MAFSQILKRSTRTPETFRSSVHSSSSSPSITVRLHIHPRSFCNKIIDNADAYSPQVITDAEKLCKMISTHRDTSQLDSLLNSTEIELSPALVVEVLKKLSNAGVFALFFFRWTEKQNGFKHTSDSYDALIEALGKIKQFKVIWTLVNDMKIKGILGKSTFALISRRYARAKKVKEAVEAFERMEKFGFKPELHDYNRFLDTLCKSRQVESAQQVFDKMKKTKFKPDIKSYTILLEGWGQEMNLLKLDEVYREMKAEEFEP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G582010
TK1151 IDTkA03G582010
OH-1004 IDLXL04_011322
Relationship / confidenceRbh Sequence Supported / Probable
Protein identity (%)94.200
Protein coverage (%)TK1151 100.000 / OH-1004 88.595
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G582010
LocationChr03:147757643-147759253 (-)
DescriptionSimilar to At1g71060: Pentatricopeptide repeat-containing protein At1g71060, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g71060 Pentatricopeptide repeat-containing protein At1g71060, mitochondrial. No verified direct reference in this release
At1g77360 Pentatricopeptide repeat-containing protein At1g77360, mitochondrial. No verified direct reference in this release
At3g22670 Pentatricopeptide repeat-containing protein At3g22670, mitochondrial. No verified direct reference in this release
At1g80550 Pentatricopeptide repeat-containing protein At1g80550, mitochondrial. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_011322 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006397 mRNA processing Biological Process
GO:0005737 cytoplasm Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0003729 mRNA binding Molecular Function
KEGG gene cross-reference
ath:AT1G71060
ath:AT1G77360
ath:AT3G49730
ath:AT3G62470
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.834
Rank 1 · TkA03G582010 · TK1151
Plastid0.105
Rank 2 · TkA03G582010 · TK1151
Nucleus0.058
Rank 3 · TkA03G582010 · TK1151
Cytoplasm0.033
Rank 4 · TkA03G582010 · TK1151
Cell membrane0.011
Rank 5 · TkA03G582010 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF29070MSC6_N47-180 aa
PF13762MNE162-132 aa
PF20503DUF673064-84 aa
PF04820Trp_halogenase108-229 aa
PF13812PPR_3115-135 aa
PF23276TPR_24116-154 aa
PF06239ECSIT_N116-169 aa
PF28774DUF8457119-147 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G582010PF29070MSC6_N471803e-2796.4
TkA03G582010PF13762MNE1621320.0001822.2
TkA03G582010PF20503DUF673064840.2313.0
TkA03G582010PF04820Trp_halogenase1082290.3710.3
TkA03G582010PF13812PPR_31151351.2e-40138.1
TkA03G582010PF23276TPR_241161542.8e-2589.5
TkA03G582010PF06239ECSIT_N1161690.000619.9
TkA03G582010PF28774DUF84571191470.007517.3
TkA03G582010PF24760TPR_IF140_C1221502e-0628.9
TkA03G582010PF13041PPR_21251542.5e-66220.3
TkA03G582010PF01535PPR1251544.8e-49161.9
TkA03G582010PF28722WHD_Sfc3_5th1271450.002318.8
TkA03G582010PF13762MNE11422070.0001822.2
TkA03G582010PF13812PPR_31452011.2e-40138.1
TkA03G582010PF17177PPR_long1462351.4e-28100.5
TkA03G582010PF24760TPR_IF140_C1591842e-0628.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9C9A2Arabidopsis thalianasp|Q9C9A2|PP112_ARATH Pentatricopeptide repeat-containing protein At1g71060, mitochondrial77.100%Swiss-ProtHigh
Q9FVX2Arabidopsis thalianasp|Q9FVX2|PP129_ARATH Pentatricopeptide repeat-containing protein At1g77360, mitochondrial37.600%Swiss-ProtLow
Q9LUJ4Arabidopsis thalianasp|Q9LUJ4|PP248_ARATH Pentatricopeptide repeat-containing protein At3g22670, mitochondrial32.500%Swiss-ProtLow
Q9M8M3Arabidopsis thalianasp|Q9M8M3|PP136_ARATH Pentatricopeptide repeat-containing protein At1g80550, mitochondrial34.200%Swiss-ProtLow

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