TkA03G568640 | RubberDandelionOmics

Gene overview

TkA03G568640

Reference: TK1151 Chr: Chr03 Coordinates: 144246210-144247010 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

603 bp · TkA03G568640|TK1151|cDNA

ATGTCCTGTATTCAGTTTGCTATGGCTATTAACAAACTCGCTTTAGCAAATTTGGTGTACAAATTTGAGTTCAAAGTGCCAAATGAAGGGAAATTGGAAGATTTGGACATGAGCGAGTCCAGTGGGCTTACCGGCACGACGAAATCACTGGAATCGCGAATTGAGAGAGCGAACAGAGGGCGAAAGAAAGAGAGAGGCACTTATCGGGAGATGCGAAGCAGCGAGCTGTGGTTTCCGTCTTTAATGGCGGAGGAAGAAGA...

CDS

Download CDS FASTA

603 bp · TkA03G568640|TK1151|CDS

ATGTCCTGTATTCAGTTTGCTATGGCTATTAACAAACTCGCTTTAGCAAATTTGGTGTACAAATTTGAGTTCAAAGTGCCAAATGAAGGGAAATTGGAAGATTTGGACATGAGCGAGTCCAGTGGGCTTACCGGCACGACGAAATCACTGGAATCGCGAATTGAGAGAGCGAACAGAGGGCGAAAGAAAGAGAGAGGCACTTATCGGGAGATGCGAAGCAGCGAGCTGTGGTTTCCGTCTTTAATGGCGGAGGAAGAAGA...

Protein

Download Protein FASTA

200 aa · TkA03G568640|TK1151|PROTEIN

MSCIQFAMAINKLALANLVYKFEFKVPNEGKLEDLDMSESSGLTGTTKSLESRIERANRGRKKERGTYREMRSSELWFPSLMAEEEEEDAIPICGFRRGGRRRRCDSDLRRSEDEEEARLGHSQLSDFCWRVFLSDLLCETRAYSIPSISWWNQITTIYPLFYSFGNRINIHKTNQTHFVIVIQLQIHHITSKYNQTNIP

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G568640`
TK1151 ID	TkA03G568640
OH-1004 ID	LXL04_001994
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	99.000
Protein coverage (%)	TK1151 50.500 / OH-1004 35.439 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID	`TkA03G568640`
Location	Chr03:144246210-144247010 (-)
Description	Similar to CYP71CB1: 3-beta-hydroxylase
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_001994` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0002238 response to molecule of fungal origin Biological Process GO:0009805 coumarin biosynthetic process Biological Process GO:0016114 terpenoid biosynthetic process Biological Process GO:0051762 sesquiterpene biosynthetic process Biological Process GO:0005789 endoplasmic reticulum membrane Cellular Component GO:0016020 membrane Cellular Component GO:0043231 intracellular membrane-bounded organelle Cellular Component GO:0004497 monooxygenase activity Molecular Function GO:0005506 iron ion binding Molecular Function GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen Molecular Function GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen Molecular Function GO:0020037 heme binding Molecular Function
KEGG gene cross-reference	ag:AAT06911 ag:ABO84854 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.493

Rank 1 · TkA03G568640 · TK1151

Cytoplasm0.386

Rank 2 · TkA03G568640 · TK1151

Cell membrane0.112

Rank 3 · TkA03G568640 · TK1151

Endoplasmic reticulum0.088

Rank 4 · TkA03G568640 · TK1151

Mitochondrion0.065

Rank 5 · TkA03G568640 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08191LRR_adjacent17-27 aa

PF08191LRR_adjacent144-180 aa

PF25937DUF7980144-178 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G568640	`PF08191`	LRR_adjacent	17	27	0.09	13.7
TkA03G568640	`PF08191`	LRR_adjacent	144	180	0.09	13.7
TkA03G568640	`PF25937`	DUF7980	144	178	0.12	13.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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