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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G551630
Reference: TK1151 Chr: Chr03 Coordinates: 139683772-139687330 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2630 bp · TkA03G551630|TK1151|cDNA

AACCATGCAAAAGAACCGACGGCGTCGTATCAGTCGTCTTCTTCTTTATCCTATTCATAAATTCACCCCATTAATAAGGACTGTACATCGCCTTTTCTCCCCCAAATTTATTTTTAAACAATTATTTCTAAAATTCTAATTTTGCCCTAAACCTTTAAACCTCAAAAAATTCTCACCAAAAAAACCCCAAATCCATATATCATGGCCTTTCATGTACGATGCCCAATTACAAGGTAACTTCCCTCTTTCTCTCTACCTTC...

CDS

Download CDS FASTA

2130 bp · TkA03G551630|TK1151|CDS

ATGCCCAATTACAAGGTAACTTCCCTCTTTCTCTCTACCTTCTACGTATCTTATTTTCTCACTCTAATTGCCTCTCTTTCCTTCGATTGCAGCCGACGAATCTGTAACTGTAAGTTGGGGTTTCCATCGGAGCTACGGAGCGAAAAGGGTCAGCTTGAGTTCTTGGAGGCAGCGGCTAGGGTTGAGGAGATTTTTAGGAATCCGTCGTTGATTTATGGCAAACCGAAGTCGGTTCAGGTTCTTGTACCGAAGGTAGTTGT...

Protein

Download Protein FASTA

709 aa · TkA03G551630|TK1151|PROTEIN

MPNYKVTSLFLSTFYVSYFLTLIASLSFDCSRRICNCKLGFPSELRSEKGQLEFLEAAARVEEIFRNPSLIYGKPKSVQVLVPKVVVAPPPLPPPPIQAIVTPNASAILDGGGDAAEELLSAQTKRVAMQKKAAAASLAAEDYARRFESGDMVEGITKDLAADEQGLLNAKVMCRLCFSGENEESERAKKMLSCKNCNKKYHRTCVKSWAQNRDLFHWSSWTCPSCRTCEVCRRTGDPNKLMYCKRCDGAYHCYCQQPPH...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G551630
TK1151 IDTkA03G551630
OH-1004 IDLXL04_010848
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)97.400
Protein coverage (%)TK1151 95.628 / OH-1004 94.583
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G551630
LocationChr03:139683772-139687330 (-)
DescriptionSimilar to KMT2B: Histone-lysine N-methyltransferase 2B
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_010848 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006346 DNA methylation-dependent constitutive heterochromatin formation Biological Process
GO:0006351 DNA-templated transcription Biological Process
GO:0008284 positive regulation of cell population proliferation Biological Process
GO:0010468 regulation of gene expression Biological Process
GO:0031507 heterochromatin formation Biological Process
GO:0032259 methylation Biological Process
GO:0032922 circadian regulation of gene expression Biological Process
GO:0033148 positive regulation of intracellular estrogen receptor signaling pathway Biological Process
GO:0035864 response to potassium ion Biological Process
GO:0043627 response to estrogen Biological Process
GO:0045815 transcription initiation-coupled chromatin remodeling Biological Process
GO:0045893 positive regulation of DNA-templated transcription Biological Process
KEGG gene cross-reference
hsa:4297
hsa:9757
mmu:75410
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.974
Rank 1 · TkA03G551630 · TK1151
Cytoplasm0.071
Rank 2 · TkA03G551630 · TK1151
Cell membrane0.026
Rank 3 · TkA03G551630 · TK1151
Endoplasmic reticulum0.015
Rank 4 · TkA03G551630 · TK1151
Plastid0.011
Rank 5 · TkA03G551630 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF16866PHD_4171-226 aa
PF00628PHD174-226 aa
PF23004PHDvar_NSD174-208 aa
PF22908PHD_NSD174-224 aa
PF16866PHD_4228-279 aa
PF22908PHD_NSD228-273 aa
PF00628PHD229-272 aa
PF23004PHDvar_NSD229-274 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G551630PF16866PHD_41712260.0001922.1
TkA03G551630PF00628PHD1742268.9e-1555.2
TkA03G551630PF23004PHDvar_NSD1742089.1e-0626.3
TkA03G551630PF22908PHD_NSD1742240.002418.8
TkA03G551630PF16866PHD_42282790.0001922.1
TkA03G551630PF22908PHD_NSD2282730.002418.8
TkA03G551630PF00628PHD2292728.9e-1555.2
TkA03G551630PF23004PHDvar_NSD2292749.1e-0626.3
TkA03G551630PF00628PHD2983058.9e-1555.2
TkA03G551630PF22908PHD_NSD3113410.002418.8
TkA03G551630PF00628PHD3123658.9e-1555.2
TkA03G551630PF16866PHD_43183650.0001922.1
TkA03G551630PF23004PHDvar_NSD3223419.1e-0626.3
TkA03G551630PF23004PHDvar_NSD3563659.1e-0626.3
TkA03G551630PF23327Chromo_MORC2_6th6506790.01515.7
TkA03G551630PF22987Tudor_KDM3B6536930.02515.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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