TkA03G550150 | RubberDandelionOmics

Gene overview

TkA03G550150

Reference: TK1151 Chr: Chr03 Coordinates: 139261317-139261864 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

384 bp · TkA03G550150|TK1151|cDNA

ATGTCAGGCCGTGGAAAGGGAGGCAAGGGGCTCGGAAAGGGAGGAGCCAAGCGACACAGGAAGGTTCTCCGTGACAACATCCAGGGAATAACCAAGCCCGCCATTCGCAGATTGGCTCGTCGTGGAGGTGTCAAGCGTTTCAGCGGCTTGATCTACGAGGAAACTCACGTGTATGAACGGGTTCGGTGGTTAGATTTAGGGTTTCCGGGTTCCGTGATAAGTCGACTTAAGTCGACTGGCGTTATGCTAATAGATGAGGG...

CDS

Download CDS FASTA

384 bp · TkA03G550150|TK1151|CDS

ATGTCAGGCCGTGGAAAGGGAGGCAAGGGGCTCGGAAAGGGAGGAGCCAAGCGACACAGGAAGGTTCTCCGTGACAACATCCAGGGAATAACCAAGCCCGCCATTCGCAGATTGGCTCGTCGTGGAGGTGTCAAGCGTTTCAGCGGCTTGATCTACGAGGAAACTCACGTGTATGAACGGGTTCGGTGGTTAGATTTAGGGTTTCCGGGTTCCGTGATAAGTCGACTTAAGTCGACTGGCGTTATGCTAATAGATGAGGG...

Protein

Download Protein FASTA

127 aa · TkA03G550150|TK1151|PROTEIN

MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRFSGLIYEETHVYERVRWLDLGFPGSVISRLKSTGVMLIDEGFGFSEGPTRKQSIPGCVKGAGKHFSRIQGEGQCRIDQRPD

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G550150`
TK1151 ID	TkA03G550150
OH-1004 ID	LXL04_025530
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	99.100
Protein coverage (%)	TK1151 90.551 / OH-1004 74.194 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA03G550150

Location Chr03:139261317-139261864 (+)

Description Similar to H4-I: Histone H4

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`UniProt: P59259`	Core component of nucleosome.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_025530 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006334 nucleosome assembly Biological Process

GO:0000786 nucleosome Cellular Component

GO:0005634 nucleus Cellular Component

GO:0003677 DNA binding Molecular Function

GO:0030527 structural constituent of chromatin Molecular Function

GO:0046982 protein heterodimerization activity Molecular Function

KEGG gene cross-reference

cre:CHLRE_06g264600v5

cre:CHLRE_06g265050v5

cre:CHLRE_06g268000v5

cre:CHLRE_06g268400v5

cre:CHLRE_06g271300v5

cre:CHLRE_06g274900v5

cre:CHLRE_12g504600v5

cre:CHLRE_12g504850v5

cre:CHLRE_12g506350v5

cre:CHLRE_12g506450v5

cre:CHLRE_16g650250v5

cre:CHLRE_17g708200v5

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.321

Rank 1 · TkA03G550150 · TK1151

Nucleus0.273

Rank 2 · TkA03G550150 · TK1151

Mitochondrion0.223

Rank 3 · TkA03G550150 · TK1151

Plastid0.083

Rank 4 · TkA03G550150 · TK1151

Extracellular0.048

Rank 5 · TkA03G550150 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF22291DUF696468-86 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G550150	`PF22291`	DUF6964	68	86	0.21	12.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`P59259`	Arabidopsis thaliana	sp\|P59259\|H4_ARATH Histone H4	98.200%	Swiss-Prot	Low

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