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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G545390
Reference: TK1151 Chr: Chr03 Coordinates: 137576106-137577993 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1493 bp · TkA03G545390|TK1151|cDNA

TTGAGACTGAAGGCTACAGAAACGAGGGTTTGGGTCAAAGTGAAGCAAAAAAGTCTTGTAAAGTTGCGGTATCATCAGGCAAGTTCTCTCCGCCCTCTTTCTCTTCCAAGTCTATCCCTTTATCAAATCGATTTTTTGGTTATTTTGAACTTCAGAAACACAGATAATCTCATGATATTCGTACAGATCTAACTTAGCTTAATTTGGTGTTCATCGCTTAATTTCTTGGTGTAGCTGCCCAAGATCGTTGTTGATACATC...

CDS

Download CDS FASTA

1032 bp · TkA03G545390|TK1151|CDS

ATGAGTCGCTCAGATGGACCTCACCGGCCATTTCTCCCAATTGGGAATCCCTTCAAGATGATGATGCCCAAAACCTCTCACCTACCATCACGAGTTCTAACAGAATTCGAAAAAAATCTGTCCGAAAGATTCAAAAAACTGAAGCCAAATAATCCAAACGATATCATCACATTTTCATGGATGAAATCCGCATTAACCTCCATTTGTGAAACTCTCGACGACATAAAAAAACTCATTGTAGATCTAAACCTCCCAATAAG...

Protein

Download Protein FASTA

343 aa · TkA03G545390|TK1151|PROTEIN

MSRSDGPHRPFLPIGNPFKMMMPKTSHLPSRVLTEFEKNLSERFKKLKPNNPNDIITFSWMKSALTSICETLDDIKKLIVDLNLPISSWDIKWVDMYLDNSLNLLDFCSAYGTDIVNQRFSYVMLKCALLDLESNNPQKLIKASSSLHEWRQYQNRHENSKLQECCEVISKLQETLNLPKIKNTPKAKDLVRAMYGLKVQTMFIFSTFVAAFSTSPRVFVELQVPKVHLWQESFTELQAVMNGEIKNVYRSGGVSPLMEL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G545390
TK1151 IDTkA03G545390
OH-1004 IDLXL04_025318
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)31.700
Protein coverage (%)TK1151 37.609 / OH-1004 92.537
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G545390
LocationChr03:137576106-137577993 (+)
DescriptionProtein of unknown function
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g01550 Required for normal root and shoot development.
BYPASS1 negatively regulates a root-derived signal that controls plant architecture.2004 · DOI: 10.1016/j.cub.2004.09.045
Dissecting the biosynthetic pathway for the bypass1 root-derived signal.2007 · DOI: 10.1111/j.1365-313x.2006.02982.x

Rice

Reference gene IDPossible functionPapers / DOI
UniProt: A2Z9A6 UPF0496 protein 4. No verified direct reference in this release
Os10g0513300 UPF0496 protein 4. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_025318 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)No functional description available
KEGG gene cross-referenceNo functional description available
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.671
Rank 1 · TkA03G545390 · TK1151
Nucleus0.341
Rank 2 · TkA03G545390 · TK1151
Cell membrane0.136
Rank 3 · TkA03G545390 · TK1151
Endoplasmic reticulum0.057
Rank 4 · TkA03G545390 · TK1151
Mitochondrion0.037
Rank 5 · TkA03G545390 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF05633ROH1-like26-119 aa
PF09392T3SS_needle_F33-59 aa
PF05008V-SNARE61-90 aa
PF22161Mre11_C_bact70-77 aa
PF03087BPS191-220 aa
PF05055DUF67792-326 aa
PF09392T3SS_needle_F132-154 aa
PF05008V-SNARE143-171 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G545390PF05633ROH1-like261194.5e-1349.7
TkA03G545390PF09392T3SS_needle_F33590.0215.9
TkA03G545390PF05008V-SNARE61900.4711.6
TkA03G545390PF22161Mre11_C_bact70772.39.0
TkA03G545390PF03087BPS1912205.3e-0523.8
TkA03G545390PF05055DUF677923260.0003120.5
TkA03G545390PF09392T3SS_needle_F1321540.0215.9
TkA03G545390PF05008V-SNARE1431710.4711.6
TkA03G545390PF00234Tryp_alpha_amyl1461870.1313.3
TkA03G545390PF05633ROH1-like1843274.5e-1349.7
TkA03G545390PF05008V-SNARE2572740.4711.6
TkA03G545390PF22161Mre11_C_bact2602822.39.0
TkA03G545390PF22161Mre11_C_bact2843102.39.0
TkA03G545390PF00234Tryp_alpha_amyl2852960.1313.3
TkA03G545390PF09392T3SS_needle_F2983110.0215.9
TkA03G545390PF05008V-SNARE3003090.4711.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LMM6Arabidopsis thalianasp|Q9LMM6|BPS1_ARATH Protein BPS1, chloroplastic44.000%Swiss-ProtMedium
A2Z9A6Oryza sativa subsp. indicasp|A2Z9A6|U496D_ORYSI UPF0496 protein 437.500%Swiss-ProtMedium
Q337C0Oryza sativa subsp. japonicasp|Q337C0|U496D_ORYSJ UPF0496 protein 437.100%Swiss-ProtMedium

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