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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G544590
Reference: TK1151 Chr: Chr03 Coordinates: 137339574-137343465 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1664 bp · TkA03G544590|TK1151|cDNA

GTAAAATCAAGGGGTGTTGGTAAATCAAAACCCCCCCCTATAACTTTCTTTCGAACTCTGAACGCATTTAGATCAACGGGGCATCTGGTTGAAACAACCTGCAATAATTGATTTGAAAGCAAGAAGATGAAGATAAATAAGGCCTGTGATCTCAGCTCAATTTCTGTTCTTCCTCCTCAATCAAGAAAGCGATCAAGTGTCTCATGTAGCCTGCCAGAGATGTCCACAACTTTCAGGCAAAGTCAAGCATCATCACAGCA...

CDS

Download CDS FASTA

1260 bp · TkA03G544590|TK1151|CDS

ATGAAGATAAATAAGGCCTGTGATCTCAGCTCAATTTCTGTTCTTCCTCCTCAATCAAGAAAGCGATCAAGTGTCTCATGTAGCCTGCCAGAGATGTCCACAACTTTCAGGCAAAGTCAAGCATCATCACAGCAGCAGCGTTCACAGCAGTCATTCTCTCAGGGACTCTCATCTCAACCTAATGCCATATTCTCTCAGTTCTCACAGAATTCCCAAGATGAAACTTTGACAAATGACCAGTTGGTTGTTTCTCAAGAAAG...

Protein

Download Protein FASTA

419 aa · TkA03G544590|TK1151|PROTEIN

MKINKACDLSSISVLPPQSRKRSSVSCSLPEMSTTFRQSQASSQQQRSQQSFSQGLSSQPNAIFSQFSQNSQDETLTNDQLVVSQERENSVKRFSCLPPVNHTREESQMPLSRSSTGLTRKWGSVSEQRGQMSEEFEHRIGTIESSLSRFGLMLESLQTDIMQVNKGTKELTMDMESIRQKLFAHDNSLQTIDNSVQMIVNSLQKINKGQEDVKSNLHGELKSLSEKLNHDKSHENSQEFSVFLSSLEEKIGMFMVKLRN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G544590
TK1151 IDTkA03G544590
OH-1004 IDLXL04_010707
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G544590
LocationChr03:137339574-137343465 (-)
DescriptionSimilar to PRD3: Putative recombination initiation defects 3
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g01690 Involved in DNA cleavage that forms the double-strand breaks (DSB) that initiate meiotic recombination.
A high throughput genetic screen identifies new early meiotic recombination functions in Arabidopsis thaliana.2009 · DOI: 10.1371/journal.pgen.1000654

Rice

Reference gene IDPossible functionPapers / DOI
Os03g0106300 Involved in spore formation.
The novel gene HOMOLOGOUS PAIRING ABERRATION IN RICE MEIOSIS1 of rice encodes a putative coiled-coil protein required for homologous chromosome pairing in meiosis.2004 · DOI: 10.1105/tpc.020701
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_010707 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009553 embryo sac development Biological Process
GO:0009554 megasporogenesis Biological Process
GO:0009555 pollen development Biological Process
GO:0009556 microsporogenesis Biological Process
GO:0042138 meiotic DNA double-strand break formation Biological Process
GO:0051026 chiasma assembly Biological Process
GO:0070192 chromosome organization involved in meiotic cell cycle Biological Process
GO:0005634 nucleus Cellular Component
KEGG gene cross-reference
ath:AT1G01690
dosa:Os03g0106300
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.905
Rank 1 · TkA03G544590 · TK1151
Cytoplasm0.232
Rank 2 · TkA03G544590 · TK1151
Mitochondrion0.028
Rank 3 · TkA03G544590 · TK1151
Cell membrane0.020
Rank 4 · TkA03G544590 · TK1151
Golgi apparatus0.011
Rank 5 · TkA03G544590 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF28641PRD3_coil47-81 aa
PF13012MitMem_reg56-63 aa
PF04136COG3_N58-58 aa
PF01519DUF1664-64 aa
PF16222DUF488184-101 aa
PF07889DUF1664115-193 aa
PF04513Baculo_PEP_C131-208 aa
PF16519TRPM_tetra131-158 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G544590PF28641PRD3_coil47814.7e-40137.4
TkA03G544590PF13012MitMem_reg56630.07613.6
TkA03G544590PF04136COG3_N58580.5211.0
TkA03G544590PF01519DUF1664640.03715.2
TkA03G544590PF16222DUF4881841010.6510.4
TkA03G544590PF07889DUF16641151930.0003721.2
TkA03G544590PF04513Baculo_PEP_C1312080.01715.9
TkA03G544590PF16519TRPM_tetra1311580.3911.6
TkA03G544590PF13012MitMem_reg1321700.07613.6
TkA03G544590PF28641PRD3_coil1341944.7e-40137.4
TkA03G544590PF28904ANGPTL81362420.006217.3
TkA03G544590PF05377FlaC_arch1391710.001619.5
TkA03G544590PF24922ACBP4_C1402270.002618.7
TkA03G544590PF01519DUF161462080.03715.2
TkA03G544590PF04136COG3_N1542540.5211.0
TkA03G544590PF05531NPV_P101562043.88.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q0WWX5Arabidopsis thalianasp|Q0WWX5|PRD3_ARATH Putative recombination initiation defects 337.500%Swiss-ProtMedium
Q75RY2Oryza sativa subsp. japonicasp|Q75RY2|PAIR1_ORYSJ Protein PAIR135.200%Swiss-ProtMedium

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