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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G539740
Reference: TK1151 Chr: Chr03 Coordinates: 135937269-135941333 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2721 bp · TkA03G539740|TK1151|cDNA

CAAACATCCCTAATATCTTTGCAGTTATTACTTTAGAATCTCTCCCAAGAACATCAAGAAAACCTTTAATGACGTCTTCTTTAACTTCATCCAATCAAAAGAGCTTTAAGTATCATGTGTTCTTAAGCTTTAGAGGTGAAGACACACGTAAGACCTTTGTTGATCATCTTTACGCTTCTCTTAAGCAAAAAGGTATCCACGCCTTCAGGGATAACGAGGAACTTGAGAAAGGAAAACAGATTGATCAACTTTTAAAGCCA...

CDS

Download CDS FASTA

1635 bp · TkA03G539740|TK1151|CDS

ATGATGTCAGTTTATTGGTGGATGAGGAAGCAATGGGCCTTTTCTGTAGGTATGCATTTAAGAGTTATATTCCAGATGAAGGATATGAAGAGCTTTTCTTTAGGTTCACATTTGTGTGGTGAAGAGAAGGTTGTATGGAGAGATATACTAAAAAGACTAGAAACAATTCCATCACGAGAAACTCTAGAGGTTTTGGAAATAAGCTATAACAGCCTAGAGGATGATATCAAGGAAATGTTCTTAGATGTTGCATGTTTCTT...

Protein

Download Protein FASTA

544 aa · TkA03G539740|TK1151|PROTEIN

MMSVYWWMRKQWAFSVGMHLRVIFQMKDMKSFSLGSHLCGEEKVVWRDILKRLETIPSRETLEVLEISYNSLEDDIKEMFLDVACFLKGIHQEYAIRMLESCGFHATYGLRVLEQRSLVTISNYRLGMHDRIQELGRNIVRRSHPHESNKHSQLWIRKEIEELFSDDVGTEASICVGLHLKPKQLSPETIIKSLGNLNKLRYLGLFGDLIDGFPGDWKFDQAKQHFLNPLRFLFWHSYPGLSLPQTFQANNLVGLELPTS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G539740
TK1151 IDTkA03G539740
OH-1004 IDLXL04_010640
Relationship / confidenceMulti Candidate From Tk1151 / Complex relationship
Protein identity (%)61.600
Protein coverage (%)TK1151 90.993 / OH-1004 19.527
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G539740
LocationChr03:135937269-135941333 (+)
DescriptionSimilar to RUN1: Disease resistance protein RUN1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g12020 Transcription factor. No verified direct reference in this release
At4g19500 Disease resistance protein that cooperates with RPP2B to confer resistance to Hyaloperonospora parasitica isolate Cala2. No verified direct reference in this release
At5g45050 Transcription factor.
Two linked pairs of Arabidopsis TNL resistance genes independently confer recognition of bacterial effector AvrRps4.2015 · DOI: 10.1038/ncomms7338
UniProt: C4B7M6 Transcription factor. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_010640 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0007165 signal transduction Biological Process
GO:0019677 NAD+ catabolic process Biological Process
GO:0043068 positive regulation of programmed cell death Biological Process
GO:0050832 defense response to fungus Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0003953 NAD+ nucleosidase activity Molecular Function
GO:0043531 ADP binding Molecular Function
GO:0050135 NADP+ nucleosidase activity Molecular Function
GO:0061809 NAD+ nucleosidase activity, cyclic ADP-ribose generating Molecular Function
KEGG gene cross-referenceNo functional description available
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.418
Rank 1 · TkA03G539740 · TK1151
Cytoplasm0.381
Rank 2 · TkA03G539740 · TK1151
Cell membrane0.150
Rank 3 · TkA03G539740 · TK1151
Endoplasmic reticulum0.116
Rank 4 · TkA03G539740 · TK1151
Extracellular0.048
Rank 5 · TkA03G539740 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF25013LRR_Zer-122-74 aa
PF23286LRR_1345-78 aa
PF23952LRR_EndoS55-74 aa
PF25019LRR_R13L1-DRL2158-73 aa
PF23598LRR_1460-92 aa
PF13855LRR_860-81 aa
PF12799LRR_461-76 aa
PF00560LRR_162-78 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G539740PF25013LRR_Zer-122740.007717.1
TkA03G539740PF23286LRR_1345780.06113.7
TkA03G539740PF23952LRR_EndoS55740.6411.0
TkA03G539740PF25019LRR_R13L1-DRL2158731.9e-0628.5
TkA03G539740PF23598LRR_1460927.6e-2484.8
TkA03G539740PF13855LRR_860814e-0524.0
TkA03G539740PF12799LRR_461769.1e-0729.6
TkA03G539740PF00560LRR_162786.1e-0626.0
TkA03G539740PF23282WHD_ROQ1771429.6e-1864.8
TkA03G539740PF23598LRR_141812117.6e-2484.8
TkA03G539740PF12799LRR_41912089.1e-0729.6
TkA03G539740PF25019LRR_R13L1-DRL211922031.9e-0628.5
TkA03G539740PF13855LRR_81922094e-0524.0
TkA03G539740PF25013LRR_Zer-11962060.007717.1
TkA03G539740PF25019LRR_R13L1-DRL212332591.9e-0628.5
TkA03G539740PF07725LRR_32512670.003317.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SZ67Arabidopsis thalianasp|Q9SZ67|WRK19_ARATH Probable WRKY transcription factor 1930.600%Swiss-ProtMedium
F4JT78Arabidopsis thalianasp|F4JT78|RPP2A_ARATH Disease resistance protein RPP2A27.800%Swiss-ProtLow
Q9FL92Arabidopsis thalianasp|Q9FL92|RRS1B_ARATH Disease resistance protein RRS1B30.100%Swiss-ProtLow
C4B7M6Arabidopsis thalianasp|C4B7M6|WR52R_ARATH Disease resistance protein RRS130.100%Swiss-ProtLow

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