TkA03G538630 | RubberDandelionOmics

Gene overview

TkA03G538630

Reference: TK1151 Chr: Chr03 Coordinates: 135618724-135622830 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1886 bp · TkA03G538630|TK1151|cDNA

TCAAAATCAACATTGGTGTCCATCACGAAAGATATTAAGGTCTCCGTCTCCTCTAGCTCTAATAAAGGCAGACGCGTCGCTGCTCACCTCCGTCACTTCTTCCAGGCGATTCGCCGCCGTGTTGGCCGGAGTCTGAGACCATGTGGAGAAGGGGAAACTCACTGAGTCGATTCACTCACCTCACCACCTCCTCGTCGTCCAAGTTCAATAGCCATCTAAACCTTCAACCAAATTCTCTTCGTCTGTTGCAAATCTCCGAT...

CDS

Download CDS FASTA

1491 bp · TkA03G538630|TK1151|CDS

ATGGAAGTTCAATCGCGAATCGGGAGTACCCGATCTCTCGATCCCGACGGAAGAGGAGGACAGCTCCGATTTTTGCTGAAAGGTCCCTTACTTCACGAAGGGCAGACGCGTCGCTGCTCACCTCCGTCACTTCTTCCAGGCGATTCGCCGCCGTGTTGGCCGGAGTCTGAGACCATGTGGAGAAGGGGAAACTCACTGAGTCGATTCACTCACCTCACCACCTCCTCGTCGTCCAAGTTCAATAGCCATCTAAACCTTCA...

Protein

Download Protein FASTA

496 aa · TkA03G538630|TK1151|PROTEIN

MEVQSRIGSTRSLDPDGRGGQLRFLLKGPLLHEGQTRRCSPPSLLPGDSPPCWPESETMWRRGNSLSRFTHLTTSSSSKFNSHLNLQPNSLRLLQISDVDHGYGLFSRSTSTTVGPSSGPGKLGIAGLDRVRAMGSTADIVDATTLGAREIVDMARHYGRCYWELSKAKLSMLVVATSGAGYVLGSGSTVDLAGLCYTCAGTMMVAASANTLNQVFEVKNDALMNRTMRRPLPSGRLSIPHAVVWAASSGLAGTALLATQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G538630`
TK1151 ID	TkA03G538630
OH-1004 ID	LXL04_010631
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA03G538630

Location Chr03:135618724-135622830 (-)

Description Similar to COX10: Protoheme IX farnesyltransferase, mitochondrial

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g44520`	Converts protoheme IX and farnesyl diphosphate to heme O.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_010631 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000266 mitochondrial fission Biological Process

GO:0006629 lipid metabolic process Biological Process

GO:0006783 heme biosynthetic process Biological Process

GO:0006784 heme A biosynthetic process Biological Process

GO:0007005 mitochondrion organization Biological Process

GO:0008535 respiratory chain complex IV assembly Biological Process

GO:0009060 aerobic respiration Biological Process

GO:0017004 cytochrome complex assembly Biological Process

GO:0018343 protein farnesylation Biological Process

GO:0035264 multicellular organism growth Biological Process

GO:0048034 heme O biosynthetic process Biological Process

GO:0055070 copper ion homeostasis Biological Process

KEGG gene cross-reference

ath:AT2G44520

hsa:1352

mmu:70383

pon:100174049

sus:Acid_4382

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.906

Rank 1 · TkA03G538630 · TK1151

Nucleus0.049

Rank 2 · TkA03G538630 · TK1151

Cytoplasm0.047

Rank 3 · TkA03G538630 · TK1151

Plastid0.037

Rank 4 · TkA03G538630 · TK1151

Cell membrane0.021

Rank 5 · TkA03G538630 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01040UbiA175-423 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G538630	`PF01040`	UbiA	175	423	6.7e-52	177.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O64886`	Arabidopsis thaliana	sp\|O64886\|COX10_ARATH Protoheme IX farnesyltransferase, mitochondrial	64.300%	Swiss-Prot	High

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