TkA03G535860 | RubberDandelionOmics

Gene overview

TkA03G535860

Reference: TK1151 Chr: Chr03 Coordinates: 134857250-134860667 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1020 bp · TkA03G535860|TK1151|cDNA

AAAGTCAAGGTTTGACTTTTCCTTTTCTCTCATCTTTCCTCCTTTTAGGCAGCTCACTTTTTCCCTCATGAAAACTCATCATTCTTTCTTGATAATCTCTCCTTCTTCTCCATAACCAAAGTCTTGCCTCAATCAGGGTTTCAATTTCTACAAATTCTTGAAGGTCAAAATCAAGAAAGTCAAAGTCAAAATGAGTACAACCACAAAGTTTATAAAATGTGTTACAGTTGGAGATGGAGCAGTTGGAAAGACTTGTCTTC...

CDS

Download CDS FASTA

594 bp · TkA03G535860|TK1151|CDS

ATGAGTACAACCACAAAGTTTATAAAATGTGTTACAGTTGGAGATGGAGCAGTTGGAAAGACTTGTCTTCTTATTTCATACACCAGCAACACTTTCCCGACTGATTATGTTCCAACAGTTTTTGATAATTTTAGTGCAAGTGTTACTGTTGATGGCCAAGTTGTCAATTTGGGTCTCTGGGATACTGCTGGTCAAGAAGACTACAACAGGTTAAGGCCTCTTAGCTACCGAGGAGCTGACGTATTTATCCTTGCTTTCTC...

Protein

Download Protein FASTA

197 aa · TkA03G535860|TK1151|PROTEIN

MSTTTKFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSASVTVDGQVVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRPSFENIAKKWIPELRHYAPLVPIVLVGTKLDLREDKKFLMDYPGASTISTAQGEELKKQIGAVGYVECSSKTQQSVKTVFDVAIKAVLQPSKPSKQKKRRLGCLVL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G535860`
TK1151 ID	TkA03G535860
OH-1004 ID	LXL04_019650
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	83.700
Protein coverage (%)	TK1151 90.355 / OH-1004 89.899 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA03G535860

Location Chr03:134857250-134860667 (-)

Description Similar to RAC1: Rac-like GTP-binding protein RAC1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

No hit for this species in the current source table.

Rice

Reference gene ID	Possible function	Papers / DOI
`Os02g0312600`	Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_019650 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0007015 actin filament organization Biological Process

GO:0007163 establishment or maintenance of cell polarity Biological Process

GO:0007165 signal transduction Biological Process

GO:0007264 small GTPase-mediated signal transduction Biological Process

GO:0008360 regulation of cell shape Biological Process

GO:0009734 auxin-activated signaling pathway Biological Process

GO:0009738 abscisic acid-activated signaling pathway Biological Process

GO:0009958 positive gravitropism Biological Process

GO:0010928 regulation of auxin mediated signaling pathway Biological Process

GO:0030865 cortical cytoskeleton organization Biological Process

GO:0032956 regulation of actin cytoskeleton organization Biological Process

GO:0043622 cortical microtubule organization Biological Process

KEGG gene cross-reference

ath:AT2G17800

ath:AT4G35020

dosa:Os02g0312600

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.545

Rank 1 · TkA03G535860 · TK1151

Cytoplasm0.373

Rank 2 · TkA03G535860 · TK1151

Golgi apparatus0.116

Rank 3 · TkA03G535860 · TK1151

Nucleus0.110

Rank 4 · TkA03G535860 · TK1151

Endoplasmic reticulum0.069

Rank 5 · TkA03G535860 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00025Arf4-95 aa

PF00009GTP_EFTU7-24 aa

PF00071Ras9-179 aa

PF08477Roc9-122 aa

PF12775AAA_79-50 aa

PF00009GTP_EFTU45-177 aa

PF03481Sua5_C106-162 aa

PF08477Roc146-180 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G535860	`PF00025`	Arf	4	95	0.00023	21.4
TkA03G535860	`PF00009`	GTP_EFTU	7	24	0.0044	17.3
TkA03G535860	`PF00071`	Ras	9	179	1.7e-50	171.4
TkA03G535860	`PF08477`	Roc	9	122	8.8e-24	84.7
TkA03G535860	`PF12775`	AAA_7	9	50	0.32	11.2
TkA03G535860	`PF00009`	GTP_EFTU	45	177	0.0044	17.3
TkA03G535860	`PF03481`	Sua5_C	106	162	0.36	12.2
TkA03G535860	`PF08477`	Roc	146	180	8.8e-24	84.7
TkA03G535860	`PF12775`	AAA_7	162	180	0.32	11.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q6Z7L8`	Oryza sativa subsp. japonica	sp\|Q6Z7L8\|RAC7_ORYSJ Rac-like GTP-binding protein 7	79.000%	Swiss-Prot	High

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