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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp

Gene overview

TkA03G531720
Reference: TK1151 Chr: Chr03 Coordinates: 133726294-133727819 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

1331 bp · TkA03G531720|TK1151|cDNA

ACCCCTTTCAAAGATTTCAACATCTTAAAATCAAACATCTTACAATACATTTGATCACACAAATAATGGAGGCCTTTTGGAAGGAGTTCGAACATCTTCAACACTTCAACTTAGAGAGAGATAAAGTCAATCACAGGCGGCTTTGATACCAAAAACGTTATTGGAGTGGGTGGATTCGGTAAGGTGTACGAAGGAGTGCTCTCTAGCTCTAAAGGGAAAAAATGGGTTGCGTGTAAGCGTCTGAGTAGCAGCTGTGGACA...

555 bp · TkA03G531720|TK1151|CDS

ATGGGGCTTGCAAAATTAGGACCCGCCAATCAACCACCACACACCTTTCTTGCAACCAATGTTGTAGGTACCTTTTGGTACATAGATCCGATGTATCTCCAGACAAGCATCCTAACAAAAGAGTCAGACGTATATTCTTTTGGGGTGGTCTTGTTTGAAGTGTTGTGTGGGAGCCTATGTTTTGAAAATAACAATAACCAGTTTCAGAGTTTAGTGCCAAGATGGAAAAAAAGCTACAAACAAAATAAATTAGACGAGAT...

184 aa · TkA03G531720|TK1151|PROTEIN

MGLAKLGPANQPPHTFLATNVVGTFWYIDPMYLQTSILTKESDVYSFGVVLFEVLCGSLCFENNNNQFQSLVPRWKKSYKQNKLDEIIFHNLKQDMNPRSLETFTQIAYQCLQKSRAERPTMSFVVEKLEIALQIQQGISKMRSMTNTSQGIIINGGSMQVVLNLRSLNLRSFDLLQMGSTGSL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G531720
TK1151 IDTkA03G531720
OH-1004 IDLXL04_011396
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)75.900
Protein coverage (%)TK1151 74.457 / OH-1004 15.981
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G531720
LocationChr03:133726294-133727819 (-)
DescriptionSimilar to At5g38990: Probable receptor-like protein kinase At5g38990
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g58940 Calmodulin-binding receptor-like cytoplasmic kinase 1. No verified direct reference in this release
At5g61560 Functions as an E3 ubiquitin ligase. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_011396 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009723 response to ethylene Biological Process
GO:0009738 abscisic acid-activated signaling pathway Biological Process
GO:0009741 response to brassinosteroid Biological Process
GO:0009742 brassinosteroid mediated signaling pathway Biological Process
GO:0009788 negative regulation of abscisic acid-activated signaling pathway Biological Process
GO:0009791 post-embryonic development Biological Process
GO:0009826 unidimensional cell growth Biological Process
GO:0009873 ethylene-activated signaling pathway Biological Process
GO:0010038 response to metal ion Biological Process
GO:0010118 stomatal movement Biological Process
GO:0010483 pollen tube reception Biological Process
GO:0030308 negative regulation of cell growth Biological Process
KEGG gene cross-reference
ath:AT1G30570
ath:AT3G51550
ath:AT5G28680
ath:AT5G38990
ath:AT5G39000
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.527
Rank 1 · TkA03G531720 · TK1151
Cell membrane0.299
Rank 2 · TkA03G531720 · TK1151
Nucleus0.280
Rank 3 · TkA03G531720 · TK1151
Golgi apparatus0.053
Rank 4 · TkA03G531720 · TK1151
Lysosome / Vacuole0.052
Rank 5 · TkA03G531720 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069Pkinase7-126 aa
PF07714PK_Tyr_Ser-Thr29-129 aa
PF30488DUF861862-119 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G531720PF00069Pkinase71263.1e-1350.4
TkA03G531720PF07714PK_Tyr_Ser-Thr291296.6e-0936.2
TkA03G531720PF30488DUF8618621190.03515.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FIL7Arabidopsis thalianasp|Q9FIL7|CRCK1_ARATH Calmodulin-binding receptor-like cytoplasmic kinase 135.900%Swiss-ProtMedium
Q9FKG5Arabidopsis thalianasp|Q9FKG5|PUB51_ARATH U-box domain-containing protein 5143.100%Swiss-ProtLow

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