TkA03G518800 | RubberDandelionOmics

Gene overview

TkA03G518800

Reference: TK1151 Chr: Chr03 Coordinates: 130183344-130185706 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

768 bp · TkA03G518800|TK1151|cDNA

ATGGCATACCCTTGTAAAAGATGTAGTTCAATTTTTATCATTCTCCATCTATTATGCACTTGTACATTGTATACAAATGGATGTTACACTTCAATCATCTGTTTTGGAGACTCTCTATCCGACACCGGTAACCTAAAACACATTACCTCTACACCCTTCCCTTACTTTTACCCCCCTTATGGGGAAACCTTTTTTCACAAACCCACCGGTCGTGCTTCTAATGGTCGCCTCATAGTCGATTTCATTGGTTTTGTGAAAAA...

CDS

Download CDS FASTA

768 bp · TkA03G518800|TK1151|CDS

ATGGCATACCCTTGTAAAAGATGTAGTTCAATTTTTATCATTCTCCATCTATTATGCACTTGTACATTGTATACAAATGGATGTTACACTTCAATCATCTGTTTTGGAGACTCTCTATCCGACACCGGTAACCTAAAACACATTACCTCTACACCCTTCCCTTACTTTTACCCCCCTTATGGGGAAACCTTTTTTCACAAACCCACCGGTCGTGCTTCTAATGGTCGCCTCATAGTCGATTTCATTGGTTTTGTGAAAAA...

Protein

Download Protein FASTA

255 aa · TkA03G518800|TK1151|PROTEIN

MAYPCKRCSSIFIILHLLCTCTLYTNGCYTSIICFGDSLSDTGNLKHITSTPFPYFYPPYGETFFHKPTGRASNGRLIVDFIGFVKNIPFFNGNGKKPKELGQGVNYAVIGSSALDSAILEARGVHNFVTNASLRVQLEWFRKSICANISDCSHLIEDSLIFISQTGMNDYLDALSAGKSISEVGTYAPFVVEAIISSINELIELGAKTILVPGTLPMGCLAFILQLYHISDKTEYDNQTGCLIHINKVAEYIPQ

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G518800`
TK1151 ID	TkA03G518800
OH-1004 ID	LXL04_010315
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	93.800
Protein coverage (%)	TK1151 99.608 / OH-1004 91.135 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA03G518800

Location Chr03:130183344-130185706 (+)

Description Similar to At1g28570: GDSL esterase/lipase At1g28570

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g28570`	GDSL esterase/lipase At1g28570.	No verified direct reference in this release
`At1g28590`	GDSL esterase/lipase At1g28590.	No verified direct reference in this release
`At1g28600`	GDSL esterase/lipase At1g28600.	No verified direct reference in this release
`At1g28580`	GDSL esterase/lipase At1g28580.	No verified direct reference in this release
`At1g28640`	GDSL esterase/lipase At1g28640.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_010315 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0005976 polysaccharide metabolic process Biological Process

GO:0010411 xyloglucan metabolic process Biological Process

GO:0016042 lipid catabolic process Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005576 extracellular region Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016788 hydrolase activity, acting on ester bonds Molecular Function

GO:0046555 acetylxylan esterase activity Molecular Function

KEGG gene cross-reference

ath:AT1G28570

ath:AT1G28580

ath:AT1G28590

ath:AT1G28600

ath:AT2G27360

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.421

Rank 1 · TkA03G518800 · TK1151

Lysosome / Vacuole0.179

Rank 2 · TkA03G518800 · TK1151

Endoplasmic reticulum0.146

Rank 3 · TkA03G518800 · TK1151

Cytoplasm0.129

Rank 4 · TkA03G518800 · TK1151

Cell membrane0.060

Rank 5 · TkA03G518800 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00657Lipase_GDSL32-252 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G518800	`PF00657`	Lipase_GDSL	32	252	1.2e-14	55.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FXJ1`	Arabidopsis thaliana	sp\|Q9FXJ1\|GDL6_ARATH GDSL esterase/lipase At1g28570	47.700%	Swiss-Prot	Medium
`Q8RXT9`	Arabidopsis thaliana	sp\|Q8RXT9\|GDL8_ARATH GDSL esterase/lipase At1g28590	46.900%	Swiss-Prot	Medium
`Q94F40`	Arabidopsis thaliana	sp\|Q94F40\|GDL9_ARATH GDSL esterase/lipase At1g28600	46.300%	Swiss-Prot	Medium
`Q9FXJ2`	Arabidopsis thaliana	sp\|Q9FXJ2\|GDL7_ARATH GDSL esterase/lipase At1g28580	45.900%	Swiss-Prot	Medium
`P0C8Z7`	Arabidopsis thaliana	sp\|P0C8Z7\|GDL91_ARATH GDSL esterase/lipase At1g28640	42.200%	Swiss-Prot	Medium

JBrowse

View in Genome Browser

Gene Card