TkA03G514870 | RubberDandelionOmics

Gene overview

TkA03G514870

Reference: TK1151 Chr: Chr03 Coordinates: 129176801-129177610 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

768 bp · TkA03G514870|TK1151|cDNA

ATGAGCCAGAAGGAATCTGGAAAGCGATCGCAAAACCAGGTGGCTCCTCCTTCATTCCCGCCACCAAGTTGTCCACGGTGCTGCTCCGATAACACCAAGTTTTGTTACTATAACAACTATACTGTGACACAGCCGCGCTATTACTGCAAGGATTGCCGCCGGTACTGGACCCACGGCGGAGCCATTAGGAACATTCCGACGGGTGGAAGCACCCGCAAGCGGGGTAGGATCGATACTTCATCCTCAACGTTGCAAGTATT...

CDS

Download CDS FASTA

768 bp · TkA03G514870|TK1151|CDS

ATGAGCCAGAAGGAATCTGGAAAGCGATCGCAAAACCAGGTGGCTCCTCCTTCATTCCCGCCACCAAGTTGTCCACGGTGCTGCTCCGATAACACCAAGTTTTGTTACTATAACAACTATACTGTGACACAGCCGCGCTATTACTGCAAGGATTGCCGCCGGTACTGGACCCACGGCGGAGCCATTAGGAACATTCCGACGGGTGGAAGCACCCGCAAGCGGGGTAGGATCGATACTTCATCCTCAACGTTGCAAGTATT...

Protein

Download Protein FASTA

255 aa · TkA03G514870|TK1151|PROTEIN

MSQKESGKRSQNQVAPPSFPPPSCPRCCSDNTKFCYYNNYTVTQPRYYCKDCRRYWTHGGAIRNIPTGGSTRKRGRIDTSSSTLQVLLPPPITWGMGAPDNNPTRGFACPSIGHGTFTPPVTETMISFNGGGGSNQTPYRFSSGSSGGELGGVMNSALGVVSLGFGAGALPAAPARLNPLSHQLSSVGGFCDFGFPVLQRPPQHLIPQNVWSTGQNMAQNSTTASANVVSVNEWCELNDIDYEGDHLQSYKPPSP

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G514870`
TK1151 ID	TkA03G514870
OH-1004 ID	LXL04_010252
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	93.700
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA03G514870

Location Chr03:129176801-129177610 (+)

Description Similar to DOF4.4: Dof zinc finger protein DOF4.4

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g21050`	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.	No verified direct reference in this release
`At4g21040`	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.	No verified direct reference in this release
`At4g21080`	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.	No verified direct reference in this release
`At4g00940`	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.	No verified direct reference in this release
`At4g38000`	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.	Overexpression of AtDOF4.7, an Arabidopsis DOF family transcription factor, induces floral organ abscission deficiency in Arabidopsis.2010 · DOI: 10.1104/pp.110.153247

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_010252 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0010154 fruit development Biological Process

GO:0010227 floral organ abscission Biological Process

GO:0045893 positive regulation of DNA-templated transcription Biological Process

GO:0090057 root radial pattern formation Biological Process

GO:2000032 regulation of secondary shoot formation Biological Process

GO:0005634 nucleus Cellular Component

GO:0000976 transcription cis-regulatory region binding Molecular Function

GO:0003677 DNA binding Molecular Function

GO:0003700 DNA-binding transcription factor activity Molecular Function

GO:0008270 zinc ion binding Molecular Function

KEGG gene cross-reference

ath:AT1G21340

ath:AT1G51700

ath:AT3G45610

ath:AT4G21050

ath:AT4G38000

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.919

Rank 1 · TkA03G514870 · TK1151

Cytoplasm0.205

Rank 2 · TkA03G514870 · TK1151

Cell membrane0.023

Rank 3 · TkA03G514870 · TK1151

Mitochondrion0.018

Rank 4 · TkA03G514870 · TK1151

Endoplasmic reticulum0.016

Rank 5 · TkA03G514870 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02701Zn_ribbon_Dof23-74 aa

PF23451Zn_ribbon_PaaD23-53 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G514870	`PF02701`	Zn_ribbon_Dof	23	74	5.4e-29	100.8
TkA03G514870	`PF23451`	Zn_ribbon_PaaD	23	53	0.17	12.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SUA9`	Arabidopsis thaliana	sp\|Q9SUA9\|DOF44_ARATH Dof zinc finger protein DOF4.4	62.000%	Swiss-Prot	Low
`Q9SUB0`	Arabidopsis thaliana	sp\|Q9SUB0\|DOF43_ARATH Dof zinc finger protein DOF4.3	62.800%	Swiss-Prot	Low
`O49550`	Arabidopsis thaliana	sp\|O49550\|DOF45_ARATH Dof zinc finger protein DOF4.5	62.800%	Swiss-Prot	Low
`Q9M161`	Arabidopsis thaliana	sp\|Q9M161\|DOF41_ARATH Dof zinc finger protein DOF4.1	52.700%	Swiss-Prot	Low
`Q84K52`	Arabidopsis thaliana	sp\|Q84K52\|DOF47_ARATH Dof zinc finger protein DOF4.7	57.700%	Swiss-Prot	Low

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