TkA03G508550 | RubberDandelionOmics

Gene overview

TkA03G508550

Reference: TK1151 Chr: Chr03 Coordinates: 127482390-127485714 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1681 bp · TkA03G508550|TK1151|cDNA

AAGACCTCCCACAGCGAGGCCAGAGCCTTTGTCATCCGGACAAGCGATCCCTTGCTTAATTTAGCGTTACCTCATAAAAAATGCACGCCTATAAACTTTAGGGTTCCAGTTTCTCTCATCTGTCTATACTATACTCCACCACAATGTTCCACCACCTCGCCGTCTACTTCCTACGAGACGCCACCACCACCATTACTACAGCATTTCCACTAATCAATATTATTACCACGCCAATCATCACCATTTTTATTTAAGGAAAC...

CDS

Download CDS FASTA

1116 bp · TkA03G508550|TK1151|CDS

ATGTCGTTGGCGCAAATCTCTGCTTTCAAGAGCTCTAATTTGGGGGCAAATGAGTCTCCTTTCCAGATTGTACGACCGAAGTCGACGAACAATCGCAATAGCAGGAGGGCAAGATGGGTGTCACCAAAAGCTGCTGTAATCCCCAATTTTCATCTTCCAATGCGCAGTTTTGAAGTTAAGAACCGGACTTCTACAGATGAGATAAAGTCTTTGAGGTTGATAACTGCAATTAAAACTCCATACCTACCCGATGGGAGGTT...

Protein

Download Protein FASTA

371 aa · TkA03G508550|TK1151|PROTEIN

MSLAQISAFKSSNLGANESPFQIVRPKSTNNRNSRRARWVSPKAAVIPNFHLPMRSFEVKNRTSTDEIKSLRLITAIKTPYLPDGRFDLEAYDALVNMQIENGVEGVIVGGTTGEGQLMSWDEHIMLIGHTINCFGTSIKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLLSHFNYILPMGPTILYNVPSRTNQDIPPPLIHTLSTTHPTLAGIKECMGHARIQTYTRSNITSWSGNDDECHDSRWD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G508550`
TK1151 ID	TkA03G508550
OH-1004 ID	LXL04_010171
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	98.700
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA03G508550

Location Chr03:127482390-127485714 (+)

Description Similar to DHDPS2: 4-hydroxy-tetrahydrodipicolinate synthase 2, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g45440`	Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).	No verified direct reference in this release
`At3g60880`	Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_010171 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009089 L-lysine biosynthetic process via diaminopimelate Biological Process

GO:0019877 diaminopimelate biosynthetic process Biological Process

GO:0009507 chloroplast Cellular Component

GO:0008840 4-hydroxy-tetrahydrodipicolinate synthase activity Molecular Function

KEGG gene cross-reference

ath:AT2G45440

ath:AT3G60880

nta:107823498

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.688

Rank 1 · TkA03G508550 · TK1151

Mitochondrion0.258

Rank 2 · TkA03G508550 · TK1151

Cytoplasm0.125

Rank 3 · TkA03G508550 · TK1151

Peroxisome0.068

Rank 4 · TkA03G508550 · TK1151

Nucleus0.045

Rank 5 · TkA03G508550 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00701DHDPS71-344 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G508550	`PF00701`	DHDPS	71	344	1.6e-89	300.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FVC8`	Arabidopsis thaliana	sp\|Q9FVC8\|DAPA2_ARATH 4-hydroxy-tetrahydrodipicolinate synthase 2, chloroplastic	74.300%	Swiss-Prot	High
`Q9LZX6`	Arabidopsis thaliana	sp\|Q9LZX6\|DAPA1_ARATH 4-hydroxy-tetrahydrodipicolinate synthase 1, chloroplastic	72.400%	Swiss-Prot	High

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