TkA03G508250 | RubberDandelionOmics

Gene overview

TkA03G508250

Reference: TK1151 Chr: Chr03 Coordinates: 127387041-127388672 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1477 bp · TkA03G508250|TK1151|cDNA

TTGAAGTGGCTTTCAATAATGAACACGTGGCTTTTGCAATGAATTCGCAAGGAGCGATGCGGATGCTCTGAGCCTTTCATATGGCTGGCTGTATGAAGTTCATCCGCTTTTTTGAACGAGTGAATCTACATCGATGAATATATACAGATATCGTATTCTGGAGAAATTTGTTCACGATTTGAATTTTAATTGATGATGCTGGAAATCGAGTTGTGGTGGTTTTAGTTCAGCAAAAACTTCCTTCGATTTCAATTCGCAAC...

CDS

Download CDS FASTA

849 bp · TkA03G508250|TK1151|CDS

ATGATAAAACTCTTCGATGCTCACTGTCACCTACAAGACCCCAGAATCATCAACAAAACCCCAAACCTTATCAAGACAGCATTAGAGAACGGCATACTCCATTTTGCAGTGAATGGCGTCTCTGAGAACGACTGGCACTTAGTAAAAGAGATGAGCAACAACCACCCTTCCATAATCCCTTCATTCGGGATCCATCCATGGTATATCATGGACAAAACCTCCAACTGGCTAACATCCTTAAGGGAGTTCATGGATTCTAC...

Protein

Download Protein FASTA

282 aa · TkA03G508250|TK1151|PROTEIN

MIKLFDAHCHLQDPRIINKTPNLIKTALENGILHFAVNGVSENDWHLVKEMSNNHPSIIPSFGIHPWYIMDKTSNWLTSLREFMDSTPSAAIGEIGLDKGSRGKTIDFTNQVETFRLQLELAKELKKPASVHCVRAFGDLLEIMKSTGPFPEGVILHSYLGSAEMVPEFAKLGAYFSFSGFLMGLKENKAKKMLKAVPSDRILLETDAPDAVPKVLDNLESVFLVEEEEGNDGLNHPANIRFVLSYVARLLDMSEEELAD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G508250`
TK1151 ID	TkA03G508250
OH-1004 ID	LXL04_004836
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	27.900
Protein coverage (%)	TK1151 68.085 / OH-1004 38.140 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA03G508250`
Location	Chr03:127387041-127388672 (+)
Description	Similar to tatdn1: Putative deoxyribonuclease TATDN1
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_004836` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0006260 DNA replication Biological Process GO:0005634 nucleus Cellular Component GO:0005654 nucleoplasm Cellular Component GO:0005739 mitochondrion Cellular Component GO:0005829 cytosol Cellular Component GO:0004520 DNA endonuclease activity Molecular Function GO:0004530 deoxyribonuclease I activity Molecular Function GO:0008296 3'-5'-DNA exonuclease activity Molecular Function GO:0046872 metal ion binding Molecular Function
KEGG gene cross-reference	bta:509365 dre:100151626 hsa:83940 mmu:69694 xla:494648 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.745

Rank 1 · TkA03G508250 · TK1151

Nucleus0.406

Rank 2 · TkA03G508250 · TK1151

Mitochondrion0.056

Rank 3 · TkA03G508250 · TK1151

Cell membrane0.047

Rank 4 · TkA03G508250 · TK1151

Peroxisome0.044

Rank 5 · TkA03G508250 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01026TatD_DNase5-271 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G508250	`PF01026`	TatD_DNase	5	271	2.6e-62	211.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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