RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G498930
Reference: TK1151 Chr: Chr03 Coordinates: 125203642-125205455 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1153 bp · TkA03G498930|TK1151|cDNA

GACCATACTTCACCGCCCGCCACTGGCCCCTCTCGCCATCCTCTTTTCCCCCAAAAGTCTATTTCGCCCTACTTTCATTTCCTTGAAAATTTCATCAATTTCATCCTTTCACGCTCTTAACCACAAAATCTACACCAATTCCATCCGCGTAATCGACAATCCGCTCGTTTTAGCGAGGTTTCCAGATTCTGACAGGGATTAATAGGGTTTTTTTTTCAGAAGAGATAATGGTTGCCCCTGAAGACGATGATAATTCCAAT...

CDS

Download CDS FASTA

723 bp · TkA03G498930|TK1151|CDS

ATGGTTGCCCCTGAAGACGATGATAATTCCAATTGTTTCCTCGATTATAGCTTAATCGAGCAGATTCCAGTCCCCGGAGGCGAACTTCCGTATCTTGAATCGGATTTTAACTGGTCGTCTAATCCTTTTTCAGGTTCAGCCAACCTTAGTGCAGGATTTCTGGACTCATCTGGAAAACCAGATTGTAGCAAGGAACTTAGGTCAAGAAAGAGGGAGCATCCTGGATCATGCTCTGCTTCTGATACCAAAGCCTGCAGAGA...

Protein

Download Protein FASTA

240 aa · TkA03G498930|TK1151|PROTEIN

MVAPEDDDNSNCFLDYSLIEQIPVPGGELPYLESDFNWSSNPFSGSANLSAGFLDSSGKPDCSKELRSRKREHPGSCSASDTKACREKRRRDKLNERFQELNEILDPGRPPKTDKTVILSDAIRKVTHLREEAMKLKDSAKDLQAKINELKVEKNELRDEKQKMKAEKERLEQQVKALSSAPAPAAFFPPPPPHSGMGMAFPANGKFMPVMGYHGVPMWPFASTAAVDTSEDHVHRSRAA

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA03G498930
TK1151 IDTkA03G498930
OH-1004 IDLXL04_010109
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.200
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G498930
LocationChr03:125203642-125205455 (-)
DescriptionSimilar to ILR3: Transcription factor ILR3
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g54680 Transcription factor.
An Arabidopsis basic helix-loop-helix leucine zipper protein modulates metal homeostasis and auxin conjugate responsiveness.2006 · DOI: 10.1534/genetics.106.061044
At1g51070 Transcription factor bHLH115. No verified direct reference in this release
At4g14410 Transcription factor bHLH104. No verified direct reference in this release
At3g23210 Transcription factor bHLH34. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_010109 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006351 DNA-templated transcription Biological Process
GO:0006355 regulation of DNA-templated transcription Biological Process
GO:0006879 intracellular iron ion homeostasis Biological Process
GO:0010030 positive regulation of seed germination Biological Process
GO:0019760 glucosinolate metabolic process Biological Process
GO:0060586 multicellular organismal-level iron ion homeostasis Biological Process
GO:0071333 cellular response to glucose stimulus Biological Process
GO:0005634 nucleus Cellular Component
GO:0000976 transcription cis-regulatory region binding Molecular Function
GO:0003677 DNA binding Molecular Function
GO:0003700 DNA-binding transcription factor activity Molecular Function
GO:0043565 sequence-specific DNA binding Molecular Function
KEGG gene cross-reference
ath:AT1G51070
ath:AT3G19860
ath:AT3G23210
ath:AT4G14410
ath:AT5G54680
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.971
Rank 1 · TkA03G498930 · TK1151
Cytoplasm0.121
Rank 2 · TkA03G498930 · TK1151
Cell membrane0.023
Rank 3 · TkA03G498930 · TK1151
Endoplasmic reticulum0.013
Rank 4 · TkA03G498930 · TK1151
Mitochondrion0.008
Rank 5 · TkA03G498930 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF26095CC_Bre163-101 aa
PF23649FKBP1563-103 aa
PF30916MBP2C63-175 aa
PF30671CCDC170_1st64-175 aa
PF19749DUF623664-80 aa
PF30381CEP135_N66-179 aa
PF23435DUF712166-174 aa
PF23172bHLH_NCOA67-105 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G498930PF26095CC_Bre1631010.001319.8
TkA03G498930PF23649FKBP15631030.411.0
TkA03G498930PF30916MBP2C631755.27.0
TkA03G498930PF30671CCDC170_1st641750.001418.8
TkA03G498930PF19749DUF623664800.5210.4
TkA03G498930PF30381CEP135_N661790.007815.9
TkA03G498930PF23435DUF7121661744.87.3
TkA03G498930PF23172bHLH_NCOA671056.88.0
TkA03G498930PF09726Macoilin711800.519.6
TkA03G498930PF23177bHLH_IRO3791686.4e-37126.5
TkA03G498930PF00010HLH821297.4e-1039.2
TkA03G498930PF09728Taxilin821000.5610.1
TkA03G498930PF09969DUF2203841026.98.1
TkA03G498930PF01956EMC3_TMCO1851030.1912.2
TkA03G498930PF25450Rab11-FIP3861010.02815.4
TkA03G498930PF06657Cep57_MT_bd861063.98.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FH37Arabidopsis thalianasp|Q9FH37|ILR3_ARATH Transcription factor ILR352.900%Swiss-ProtHigh
Q9C682Arabidopsis thalianasp|Q9C682|BH115_ARATH Transcription factor bHLH11549.800%Swiss-ProtMedium
Q8L467Arabidopsis thalianasp|Q8L467|BH104_ARATH Transcription factor bHLH10445.200%Swiss-ProtMedium
Q9LTC7Arabidopsis thalianasp|Q9LTC7|BH034_ARATH Transcription factor bHLH3445.600%Swiss-ProtMedium

JBrowse

View in Genome Browser