TkA03G498680 | RubberDandelionOmics

Gene overview

TkA03G498680

Reference: TK1151 Chr: Chr03 Coordinates: 125106240-125113810 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

982 bp · TkA03G498680|TK1151|cDNA

CTTATACAAACCTTGACCCAGTCAAAAAAAGTTGGGTTTCTTTTTAGGACTCAACAGTTTATATCCCTTCCATCTCCTTTCTCCTCCCTCCTCCGCCACAACTAAACATGCCCATTCCCGCCGGAAAACTCCTCCTCCCCTTCTCTTTCATTTTCATATACTTTATCCCTACCATCACCTTAGCTCAACCTGAGTTCCTTTCCTATTTCTGCACCAACGATGCTAACTTCACTTCAAACAGTGCATACGCAAGCAATCTA...

CDS

Download CDS FASTA

897 bp · TkA03G498680|TK1151|CDS

ATGCCCATTCCCGCCGGAAAACTCCTCCTCCCCTTCTCTTTCATTTTCATATACTTTATCCCTACCATCACCTTAGCTCAACCTGAGTTCCTTTCCTATTTCTGCACCAACGATGCTAACTTCACTTCAAACAGTGCATACGCAAGCAATCTAAACACCACCCTCACCGCCCTTCCCAACACCAACTCCGGCTACGGTTTCTTCAACAGCTCTACCGGCGAAGGCGACGACAGAGTCAACTCAGTCGCGCTTTGTCGAGG...

Protein

Download Protein FASTA

298 aa · TkA03G498680|TK1151|PROTEIN

MPIPAGKLLLPFSFIFIYFIPTITLAQPEFLSYFCTNDANFTSNSAYASNLNTTLTALPNTNSGYGFFNSSTGEGDDRVNSVALCRGDTAPDMCSSCLNDSIAKLRQICPKQKEAIGYYDNCLMKYSNETILGNTRIRFYVFLASPNNASDIDRFNSALRPLMDNLTTTAASGGPLQKYASGNTTGPDFTRIYGLVQCTPDLSETQCSDCLGDAINRIGMWFNGKVGGRILLPMCNFRYEIYRFFNASTAAITPPPSSPP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G498680`
TK1151 ID	TkA03G498680
OH-1004 ID	LXL04_002640
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	78.600
Protein coverage (%)	TK1151 79.866 / OH-1004 48.276 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA03G498680

Location Chr03:125106240-125113810 (+)

Description Similar to CRK25: Cysteine-rich receptor-like protein kinase 25

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g05200`	Cysteine-rich receptor-like protein kinase 25.	No verified direct reference in this release
`At4g23140`	Cysteine-rich receptor-like protein kinase 6.	No verified direct reference in this release
`At4g23160`	Cysteine-rich receptor-like protein kinase 8.	No verified direct reference in this release
`At4g23150`	Cysteine-rich receptor-like protein kinase 7.	No verified direct reference in this release
`At4g21410`	Cysteine-rich receptor-like protein kinase 29.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_002640 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000302 response to reactive oxygen species Biological Process

GO:0006955 immune response Biological Process

GO:0006979 response to oxidative stress Biological Process

GO:0007165 signal transduction Biological Process

GO:0009626 plant-type hypersensitive response Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0042742 defense response to bacterium Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005576 extracellular region Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009505 plant-type cell wall Cellular Component

KEGG gene cross-reference

ath:AT3G22060

ath:AT4G05200

ath:AT4G23150

ath:AT4G23180

ath:AT4G38830

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.701

Rank 1 · TkA03G498680 · TK1151

Extracellular0.145

Rank 2 · TkA03G498680 · TK1151

Endoplasmic reticulum0.080

Rank 3 · TkA03G498680 · TK1151

Cytoplasm0.066

Rank 4 · TkA03G498680 · TK1151

Nucleus0.025

Rank 5 · TkA03G498680 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01657Stress-antifung35-129 aa

PF01657Stress-antifung148-241 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G498680	`PF01657`	Stress-antifung	35	129	9.1e-39	132.8
TkA03G498680	`PF01657`	Stress-antifung	148	241	9.1e-39	132.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9M0X5`	Arabidopsis thaliana	sp\|Q9M0X5\|CRK25_ARATH Cysteine-rich receptor-like protein kinase 25	37.400%	Swiss-Prot	Medium
`Q9C5S9`	Arabidopsis thaliana	sp\|Q9C5S9\|CRK6_ARATH Cysteine-rich receptor-like protein kinase 6	33.900%	Swiss-Prot	Medium
`O65468`	Arabidopsis thaliana	sp\|O65468\|CRK8_ARATH Cysteine-rich receptor-like protein kinase 8	36.100%	Swiss-Prot	Medium
`Q8L7G3`	Arabidopsis thaliana	sp\|Q8L7G3\|CRK7_ARATH Cysteine-rich receptor-like protein kinase 7	38.000%	Swiss-Prot	Medium
`Q8S9L6`	Arabidopsis thaliana	sp\|Q8S9L6\|CRK29_ARATH Cysteine-rich receptor-like protein kinase 29	39.100%	Swiss-Prot	Medium

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