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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G494360
Reference: TK1151 Chr: Chr03 Coordinates: 124033975-124037402 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2007 bp · TkA03G494360|TK1151|cDNA

ATGGAGGCTTTCGACCATCTCAGATTTCCACTAAAGATTATACTGCATGCGACCAAGAACTTTGGTGCTGAAAACTTCATAGCCGAGGGTGGATTCGTGAAGGTTTATAGAGGGGAATTCTCAAACACCATGGGTGCAGTAAAGCTGTTTAATCGATTAATAGACAAAGCGGATGTTTCATTTCGGACTGAAATCATGTTTCTTACAAGTTGTTCACATGAAAATCTCATCTCACTCATGGGATTCTGTGATGAGGGTGA...

CDS

Download CDS FASTA

2007 bp · TkA03G494360|TK1151|CDS

ATGGAGGCTTTCGACCATCTCAGATTTCCACTAAAGATTATACTGCATGCGACCAAGAACTTTGGTGCTGAAAACTTCATAGCCGAGGGTGGATTCGTGAAGGTTTATAGAGGGGAATTCTCAAACACCATGGGTGCAGTAAAGCTGTTTAATCGATTAATAGACAAAGCGGATGTTTCATTTCGGACTGAAATCATGTTTCTTACAAGTTGTTCACATGAAAATCTCATCTCACTCATGGGATTCTGTGATGAGGGTGA...

Protein

Download Protein FASTA

668 aa · TkA03G494360|TK1151|PROTEIN

MEAFDHLRFPLKIILHATKNFGAENFIAEGGFVKVYRGEFSNTMGAVKLFNRLIDKADVSFRTEIMFLTSCSHENLISLMGFCDEGENRILVYEYADFGLSRHGPANQDRTFVFSEAKGTLGYCDPMYVEDMLLTKESDVYSFGVVLFEALCSRPCVEWKYSKYWSRSTTMKKDHYPTCRPKMESVVSKLKTALEFQDIFDVKIAEIGHRMSLNEIVFDFKPYKKTDVDHFRIPLEKIMDATKNFSAENFIAESRYGKVY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA03G494360
TK1151 IDTkA03G494360
OH-1004 IDLXL04_010074
Relationship / confidenceRbh Sequence Supported / Probable
Protein identity (%)92.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G494360
LocationChr03:124033975-124037402 (+)
DescriptionSimilar to HERK1: Receptor-like protein kinase HERK 1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g46290 Receptor-like protein kinase required for cell elongation during vegetative growth, mostly in a brassinosteroid-(BR-) independent manner.
Three related receptor-like kinases are required for optimal cell elongation in Arabidopsis thaliana.2009 · DOI: 10.1073/pnas.0812346106
At5g59700 Probable receptor-like protein kinase At5g59700. No verified direct reference in this release
At1g30570 Probable receptor-like protein kinase At1g30570. No verified direct reference in this release
At5g24010 Probable receptor-like protein kinase At5g24010. No verified direct reference in this release
At2g39360 Probable receptor-like protein kinase At2g39360. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_010074 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009741 response to brassinosteroid Biological Process
GO:0009826 unidimensional cell growth Biological Process
GO:0010183 pollen tube guidance Biological Process
GO:0010483 pollen tube reception Biological Process
GO:0005576 extracellular region Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0009506 plasmodesma Cellular Component
GO:0043680 filiform apparatus Cellular Component
GO:0004672 protein kinase activity Molecular Function
GO:0004674 protein serine/threonine kinase activity Molecular Function
GO:0004714 transmembrane receptor protein tyrosine kinase activity Molecular Function
GO:0005524 ATP binding Molecular Function
KEGG gene cross-reference
ath:AT3G46290
ath:AT5G59700
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.661
Rank 1 · TkA03G494360 · TK1151
Nucleus0.326
Rank 2 · TkA03G494360 · TK1151
Cell membrane0.171
Rank 3 · TkA03G494360 · TK1151
Endoplasmic reticulum0.052
Rank 4 · TkA03G494360 · TK1151
Mitochondrion0.044
Rank 5 · TkA03G494360 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07714PK_Tyr_Ser-Thr26-96 aa
PF00069Pkinase26-96 aa
PF07714PK_Tyr_Ser-Thr96-187 aa
PF00069Pkinase96-161 aa
PF07714PK_Tyr_Ser-Thr271-481 aa
PF00069Pkinase272-478 aa
PF00462Glutaredoxin524-588 aa
PF04908SH3BGR538-607 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G494360PF07714PK_Tyr_Ser-Thr26961.4e-36126.8
TkA03G494360PF00069Pkinase26962.5e-30106.5
TkA03G494360PF07714PK_Tyr_Ser-Thr961871.4e-36126.8
TkA03G494360PF00069Pkinase961612.5e-30106.5
TkA03G494360PF07714PK_Tyr_Ser-Thr2714811.4e-36126.8
TkA03G494360PF00069Pkinase2724782.5e-30106.5
TkA03G494360PF00462Glutaredoxin5245889.5e-1039.3
TkA03G494360PF04908SH3BGR5386070.1213.2
TkA03G494360PF25112zf-AtTam376186390.2512.8
TkA03G494360PF23733GRXCR1-2_C6196616.2e-0936.4
TkA03G494360PF25436BSD2_CRD6196361.89.5
TkA03G494360PF25112zf-AtTam376466650.2512.8
TkA03G494360PF25436BSD2_CRD6476621.89.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LX66Arabidopsis thalianasp|Q9LX66|HERK_ARATH Receptor-like protein kinase HERK 137.100%Swiss-ProtLow
Q9FN92Arabidopsis thalianasp|Q9FN92|Y5597_ARATH Probable receptor-like protein kinase At5g5970037.100%Swiss-ProtLow
Q9SA72Arabidopsis thalianasp|Q9SA72|Y1357_ARATH Probable receptor-like protein kinase At1g3057036.600%Swiss-ProtLow
Q9FLW0Arabidopsis thalianasp|Q9FLW0|Y5241_ARATH Probable receptor-like protein kinase At5g2401036.000%Swiss-ProtLow
O80623Arabidopsis thalianasp|O80623|Y2393_ARATH Probable receptor-like protein kinase At2g3936033.000%Swiss-ProtLow

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