TkA03G494100 | RubberDandelionOmics

Gene overview

TkA03G494100

Reference: TK1151 Chr: Chr03 Coordinates: 123943624-123945209 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

786 bp · TkA03G494100|TK1151|cDNA

ATGGATAGCTACAGTGCTATAGTATCCACGGGAAAACGACGTCGCTTTGTGAAGTTGGAAAAGTTGGAAAAGATCCGATGGCTCGCTCCTGCCCTTTTATCTCAGCCTCAACTTCTTCTTCCTCGAGGCGACGACCTTGACCTAATCTGCTCTTCAAGCCTCAAATGGGTTCACAAGCACGACAACTTCACAAGCGAGCATCTCCTTATCCGATTTCACACAGGTATGTCCGATTCGATTCCGATTTCACACAGACACAT...

CDS

Download CDS FASTA

786 bp · TkA03G494100|TK1151|CDS

ATGGATAGCTACAGTGCTATAGTATCCACGGGAAAACGACGTCGCTTTGTGAAGTTGGAAAAGTTGGAAAAGATCCGATGGCTCGCTCCTGCCCTTTTATCTCAGCCTCAACTTCTTCTTCCTCGAGGCGACGACCTTGACCTAATCTGCTCTTCAAGCCTCAAATGGGTTCACAAGCACGACAACTTCACAAGCGAGCATCTCCTTATCCGATTTCACACAGGTATGTCCGATTCGATTCCGATTTCACACAGACACAT...

Protein

Download Protein FASTA

261 aa · TkA03G494100|TK1151|PROTEIN

MDSYSAIVSTGKRRRFVKLEKLEKIRWLAPALLSQPQLLLPRGDDLDLICSSSLKWVHKHDNFTSEHLLIRFHTGMSDSIPISHRHINLEKSMIFPLSGRDSPSAIATTPYGSVHVSHGSKITSFDWSLQRKSTTLTQFTVIDSLLALSSDVVAAGATDFSASPELLFTSFESSRRNSNSILVYDLNDSFKVVSELGHNEIFGADLSSINGGVNYSTSFGSQTCNMIQLQHNSITTVFNYSRIQLHSSALQPTKQGLIIF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G494100`
TK1151 ID	TkA03G494100
OH-1004 ID	LXL04_021149
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	76.400
Protein coverage (%)	TK1151 49.425 / OH-1004 84.737 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA03G494100

Location Chr03:123943624-123945209 (+)

Description Similar to At5g41330: BTB/POZ domain-containing protein At5g41330

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g41330`	May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_021149 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006886 intracellular protein transport Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0016567 protein ubiquitination Biological Process

GO:0050832 defense response to fungus Biological Process

GO:0051260 protein homooligomerization Biological Process

GO:0005634 nucleus Cellular Component

GO:0005829 cytosol Cellular Component

KEGG gene cross-reference

ath:AT3G09030

ath:AT5G41330

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.388

Rank 1 · TkA03G494100 · TK1151

Cytoplasm0.370

Rank 2 · TkA03G494100 · TK1151

Cell membrane0.141

Rank 3 · TkA03G494100 · TK1151

Endoplasmic reticulum0.117

Rank 4 · TkA03G494100 · TK1151

Mitochondrion0.116

Rank 5 · TkA03G494100 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF25279Beta_prop_At2g24240103-159 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G494100	`PF25279`	Beta_prop_At2g24240	103	159	0.02	14.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FN67`	Arabidopsis thaliana	sp\|Q9FN67\|Y5133_ARATH BTB/POZ domain-containing protein At5g41330	50.300%	Swiss-Prot	Low

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