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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G487060
Reference: TK1151 Chr: Chr03 Coordinates: 121880153-121880500 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

312 bp · TkA03G487060|TK1151|cDNA

ATGGAGAAGTGCAAGAAAGAAAAGAAGAAAGACGATTTGAGGGACTTCAAGCTTCTGTTAGCTCAAATTCGTGTGATTCAAGGTGATTATAACGAGGCTAGAGACTTTAGGCTATACTTGTGTCAAGGGATTATATACACACTGTTAGGAAAGAACGATGATGCTGAGAAGAGTTTTGAAAATTATATGAGGCTTGTTCCTAAGGGACATCCTTACACTAGATATTTCTGTTATGATGCAAATTATGGCAATTTACTTGT...

CDS

Download CDS FASTA

312 bp · TkA03G487060|TK1151|CDS

ATGGAGAAGTGCAAGAAAGAAAAGAAGAAAGACGATTTGAGGGACTTCAAGCTTCTGTTAGCTCAAATTCGTGTGATTCAAGGTGATTATAACGAGGCTAGAGACTTTAGGCTATACTTGTGTCAAGGGATTATATACACACTGTTAGGAAAGAACGATGATGCTGAGAAGAGTTTTGAAAATTATATGAGGCTTGTTCCTAAGGGACATCCTTACACTAGATATTTCTGTTATGATGCAAATTATGGCAATTTACTTGT...

Protein

Download Protein FASTA

103 aa · TkA03G487060|TK1151|PROTEIN

MEKCKKEKKKDDLRDFKLLLAQIRVIQGDYNEARDFRLYLCQGIIYTLLGKNDDAEKSFENYMRLVPKGHPYTRYFCYDANYGNLLVSRVNVVLFQFGSIEKI

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA03G487060
TK1151 IDTkA03G487060
OH-1004 IDLXL04_025854
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)37.500
Protein coverage (%)TK1151 66.019 / OH-1004 24.615
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G487060
LocationChr03:121880153-121880500 (-)
DescriptionSimilar to SG1: protein SLOW GREEN 1, chloroplastic
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_025854 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009658 chloroplast organization Biological Process
GO:0005829 cytosol Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0009536 plastid Cellular Component
GO:0009941 chloroplast envelope Cellular Component
KEGG gene cross-reference
ath:AT3G18420
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.403
Rank 1 · TkA03G487060 · TK1151
Cytoplasm0.373
Rank 2 · TkA03G487060 · TK1151
Mitochondrion0.112
Rank 3 · TkA03G487060 · TK1151
Extracellular0.072
Rank 4 · TkA03G487060 · TK1151
Cell membrane0.054
Rank 5 · TkA03G487060 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF19440TTC7_N6-35 aa
PF13428TPR_1417-35 aa
PF13181TPR_818-35 aa
PF07719TPR_219-35 aa
PF13176TPR_719-34 aa
PF13431TPR_1719-34 aa
PF00515TPR_120-35 aa
PF13424TPR_1220-35 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G487060PF19440TTC7_N6350.1911.4
TkA03G487060PF13428TPR_1417350.1613.4
TkA03G487060PF13181TPR_818350.01116.6
TkA03G487060PF07719TPR_219358.3e-0523.1
TkA03G487060PF13176TPR_719340.03714.8
TkA03G487060PF13431TPR_1719340.05114.6
TkA03G487060PF00515TPR_120350.0006820.1
TkA03G487060PF13424TPR_1220350.009916.8
TkA03G487060PF13431TPR_1735560.05114.6
TkA03G487060PF07719TPR_237678.3e-0523.1
TkA03G487060PF13428TPR_1437680.1613.4
TkA03G487060PF00515TPR_138610.0006820.1
TkA03G487060PF13424TPR_1238630.009916.8
TkA03G487060PF13181TPR_842620.01116.6
TkA03G487060PF13176TPR_743640.03714.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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