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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G484520
Reference: TK1151 Chr: Chr03 Coordinates: 121228398-121230306 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1554 bp · TkA03G484520|TK1151|cDNA

GAACACTAAAAAAGCAATGTACCCCGAATTTTGTAAAGGTTTCCCTCTTCAGGGACTCTGCAATTATTATAAGTGGGTTCGAAATTCGAGGATGAACAGTGACCCCGTTTGAAAAGAGGAATAAAAAAAGAGGATCACATAGCCTATATGTGTCTGTTTTATATAAAAGGGAGAAATGGAAGGTAGAACAGGACAATCAGGAGCACAAACCTACTGTCCATGCCATAACAATCCACCACAGACCACAATGCAATTGATTT...

CDS

Download CDS FASTA

1269 bp · TkA03G484520|TK1151|CDS

ATGATGGGTGGAGGAGGTGGATCCAAGAAGCTCAAGAGGGTTGCTCGGAGATTACTGCATACCTGCGGCTCTTTCTCTTTCCGGCAAAATCATCTCGAATCCCCTTCCGCCACCGTGGTAATTGCATCAGGTTCGTCTAATAGTTCTCCCAAACCCAGCAAGATTAATCCAACAGATGATTTTACAGAAAATGTTTCCAACGCAGATCCAACAACTTCACCTTCCAAGACGATGTGTGCGATATGCCTAGAACCTCTCAA...

Protein

Download Protein FASTA

423 aa · TkA03G484520|TK1151|PROTEIN

MMGGGGGSKKLKRVARRLLHTCGSFSFRQNHLESPSATVVIASGSSNSSPKPSKINPTDDFTENVSNADPTTSPSKTMCAICLEPLNYSACSTPGQAIFTAQCSHAFHFDCIASNVRHGGVTCPICRAQWTHLPRNLKTPPYANLTDDPILQILDDSIATFRVHRRSILRTARYNDDDPIEPTHGLQPNHPRLHLSILPEPLSHIPSSSISSPDPTYRPACLSVRLAHQPAIDLVLVASPNGPHLRLIKQSMALVVFSLR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G484520
TK1151 IDTkA03G484520
OH-1004 IDLXL04_009944
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)100.000
Protein coverage (%)TK1151 99.764 / OH-1004 66.667
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G484520
LocationChr03:121228398-121230306 (+)
DescriptionSimilar to WAVH2: Probable E3 ubiquitin-protein ligase WAVH2
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g37890 Probable E3 ubiquitin-protein ligase involved in female gametophyte development. No verified direct reference in this release
At2g22680 E3 ubiquitin-protein ligase involved in the regulation of root growth.
The wavy growth 3 E3 ligase family controls the gravitropic response in Arabidopsis roots.2012 · DOI: 10.1111/j.1365-313x.2011.04870.x
At5g49665 E3 ubiquitin-protein ligase involved in the regulation of root growth.
The wavy growth 3 E3 ligase family controls the gravitropic response in Arabidopsis roots.2012 · DOI: 10.1111/j.1365-313x.2011.04870.x

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_009944 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009630 gravitropism Biological Process
GO:0010197 polar nucleus fusion Biological Process
GO:0010274 hydrotropism Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0048364 root development Biological Process
GO:0005576 extracellular region Cellular Component
GO:0005634 nucleus Cellular Component
GO:0009506 plasmodesma Cellular Component
GO:0008270 zinc ion binding Molecular Function
GO:0061630 ubiquitin protein ligase activity Molecular Function
KEGG gene cross-reference
ath:AT2G22680
ath:AT4G37890
ath:AT5G49665
ath:AT5G65683
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.469
Rank 1 · TkA03G484520 · TK1151
Cytoplasm0.313
Rank 2 · TkA03G484520 · TK1151
Cell membrane0.153
Rank 3 · TkA03G484520 · TK1151
Endoplasmic reticulum0.102
Rank 4 · TkA03G484520 · TK1151
Lysosome / Vacuole0.061
Rank 5 · TkA03G484520 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00092VWA28-52 aa
PF29452FAR1_N77-117 aa
PF23555zf-RING_Vps4177-127 aa
PF13920zf-C3HC4_377-131 aa
PF13639zf-RING_278-127 aa
PF12678zf-rbx178-127 aa
PF13923zf-C3HC4_278-126 aa
PF12861zf-ANAPC1178-131 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G484520PF00092VWA28520.0002122.3
TkA03G484520PF29452FAR1_N771170.0009719.8
TkA03G484520PF23555zf-RING_Vps41771270.02814.7
TkA03G484520PF13920zf-C3HC4_3771311.39.6
TkA03G484520PF13639zf-RING_2781271.3e-0732.4
TkA03G484520PF12678zf-rbx1781272.3e-0731.7
TkA03G484520PF13923zf-C3HC4_2781260.0001322.4
TkA03G484520PF12861zf-ANAPC11781310.0009519.9
TkA03G484520PF00097zf-C3HC4791261.6e-0731.7
TkA03G484520PF17123zf-RING_11791122.1e-0731.2
TkA03G484520PF13445zf-RING_UBOX791248.1e-0729.7
TkA03G484520PF14634zf-RING_5791270.005717.3
TkA03G484520PF00628PHD791170.0713.9
TkA03G484520PF23412zf_RING_Vps8791150.1213.0
TkA03G484520PF14570zf-RING_4791300.1712.4
TkA03G484520PF26148VPS18_RING_C961180.2612.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
F4JSV3Arabidopsis thalianasp|F4JSV3|EDA40_ARATH Probable E3 ubiquitin-protein ligase EDA4028.800%Swiss-ProtLow
Q9ZQ46Arabidopsis thalianasp|Q9ZQ46|WAVH1_ARATH E3 ubiquitin-protein ligase WAVH127.900%Swiss-ProtLow
Q9LTA6Arabidopsis thalianasp|Q9LTA6|WAV3_ARATH E3 ubiquitin-protein ligase WAV325.400%Swiss-ProtLow

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