TkA03G483000 | RubberDandelionOmics

Gene overview

TkA03G483000

Reference: TK1151 Chr: Chr03 Coordinates: 120796022-120798529 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

957 bp · TkA03G483000|TK1151|cDNA

ATGTTTCTCTTATCTTTTTCCGTAGATAATACAGATTCAGTGTTAATTTTAATATGCACTGATAGGTCGATTAAAGCGGCCCTAGACAAGCTGGATTTATCGCAAAACGGCGGGATTTATCTGTCAGGCATTTCAAGAGTCAAGTTTTGGTTTTTGATAAATGGTGGATCCACTGTTAACAGTGGTTCTAGCTACATGAATCCATGGTCAATCTCTACTGTCAACAATCTACTGCAAAAGATGAATTCTCAAATATTAAA...

CDS

Download CDS FASTA

957 bp · TkA03G483000|TK1151|CDS

ATGTTTCTCTTATCTTTTTCCGTAGATAATACAGATTCAGTGTTAATTTTAATATGCACTGATAGGTCGATTAAAGCGGCCCTAGACAAGCTGGATTTATCGCAAAACGGCGGGATTTATCTGTCAGGCATTTCAAGAGTCAAGTTTTGGTTTTTGATAAATGGTGGATCCACTGTTAACAGTGGTTCTAGCTACATGAATCCATGGTCAATCTCTACTGTCAACAATCTACTGCAAAAGATGAATTCTCAAATATTAAA...

Protein

Download Protein FASTA

318 aa · TkA03G483000|TK1151|PROTEIN

MFLLSFSVDNTDSVLILICTDRSIKAALDKLDLSQNGGIYLSGISRVKFWFLINGGSTVNSGSSYMNPWSISTVNNLLQKMNSQILKYQGYRASSKCYPGKVPLSSLQKSARNKIKGCAGKGAFAQVYKACLNNNADDLVALKIQKPSFPWDIYMYRQLDKRIAENEVDPIKFQNGLSSLCPSSNRWSMLGTNNSIKWNGIGHGEGMRRRFSRVKVATDPSPCSSDAVVDDYYAVLGLWPILGKPKAEAAFRRADEGFCV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G483000`
TK1151 ID	TkA03G483000
OH-1004 ID	LXL04_009923
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	90.700
Protein coverage (%)	TK1151 74.843 / OH-1004 94.275 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA03G483000

Location Chr03:120796022-120798529 (-)

Description Similar to BUB1: Mitotic checkpoint serine/threonine-protein kinase BUB1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g20635`	Serine/threonine-protein kinase that performs 2 crucial functions during mitosis: it is essential for spindle-assembly checkpoint signaling and for correct chromosome alignment.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_009923 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0007059 chromosome segregation Biological Process

GO:0007094 mitotic spindle assembly checkpoint signaling Biological Process

GO:0051301 cell division Biological Process

GO:0051754 meiotic sister chromatid cohesion, centromeric Biological Process

GO:0000776 kinetochore Cellular Component

GO:0000940 outer kinetochore Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0004672 protein kinase activity Molecular Function

GO:0004674 protein serine/threonine kinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0106310 protein serine kinase activity Molecular Function

KEGG gene cross-reference

ath:AT2G20635

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.447

Rank 1 · TkA03G483000 · TK1151

Cytoplasm0.365

Rank 2 · TkA03G483000 · TK1151

Cell membrane0.122

Rank 3 · TkA03G483000 · TK1151

Endoplasmic reticulum0.100

Rank 4 · TkA03G483000 · TK1151

Mitochondrion0.097

Rank 5 · TkA03G483000 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03109ABC1123-156 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G483000	`PF03109`	ABC1	123	156	0.033	14.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`F4IVI0`	Arabidopsis thaliana	sp\|F4IVI0\|BUB1_ARATH Mitotic checkpoint serine/threonine-protein kinase BUB1	52.200%	Swiss-Prot	Low

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