TkA03G481990 | RubberDandelionOmics

Gene overview

TkA03G481990

Reference: TK1151 Chr: Chr03 Coordinates: 120556692-120557033 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

342 bp · TkA03G481990|TK1151|cDNA

GGTTCAATCCCTCCTACATTCGGTTCATGTACATTGCTTCAAAATCTCGATTTTGGTAATAATTCGTTGGTGGGTGAAATCCCTGATTCGTTTGGTAACTGCACTAAGCTTTATAATGTCAATTTGAGTTTGAATTCGTTGACGGGTTCCGTTCCTGTATCCCTCTCGCAATCCAATTCCCTCATGTTTCTATCTCTCCCATTCAACAATTTTTCAGGGGTTCTTCCTGATTCATGGGGTGGTGGAAAAAACGGCGATAA...

CDS

Download CDS FASTA

342 bp · TkA03G481990|TK1151|CDS

GGTTCAATCCCTCCTACATTCGGTTCATGTACATTGCTTCAAAATCTCGATTTTGGTAATAATTCGTTGGTGGGTGAAATCCCTGATTCGTTTGGTAACTGCACTAAGCTTTATAATGTCAATTTGAGTTTGAATTCGTTGACGGGTTCCGTTCCTGTATCCCTCTCGCAATCCAATTCCCTCATGTTTCTATCTCTCCCATTCAACAATTTTTCAGGGGTTCTTCCTGATTCATGGGGTGGTGGAAAAAACGGCGATAA...

Protein

Download Protein FASTA

113 aa · TkA03G481990|TK1151|PROTEIN

GSIPPTFGSCTLLQNLDFGNNSLVGEIPDSFGNCTKLYNVNLSLNSLTGSVPVSLSQSNSLMFLSLPFNNFSGVLPDSWGGGKNGDKSIVKSSRYIFRVKRIERKDYKESKRV

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G481990`
TK1151 ID	TkA03G481990
OH-1004 ID	LXL04_006738
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	88.500
Protein coverage (%)	TK1151 100.000 / OH-1004 28.321 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA03G481990`
Location	Chr03:120556692-120557033 (+)
Description	Similar to IMK2: Probably inactive leucine-rich repeat receptor-like protein kinase IMK2
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_006738` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0009740 gibberellic acid mediated signaling pathway Biological Process GO:0005576 extracellular region Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005886 plasma membrane Cellular Component GO:0009505 plant-type cell wall Cellular Component GO:0009506 plasmodesma Cellular Component GO:0004672 protein kinase activity Molecular Function GO:0005524 ATP binding Molecular Function
KEGG gene cross-reference	ath:AT3G51740 ath:AT5G59845 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.470

Rank 1 · TkA03G481990 · TK1151

Endoplasmic reticulum0.146

Rank 2 · TkA03G481990 · TK1151

Extracellular0.138

Rank 3 · TkA03G481990 · TK1151

Cytoplasm0.113

Rank 4 · TkA03G481990 · TK1151

Nucleus0.100

Rank 5 · TkA03G481990 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00560LRR_11-10 aa

PF00560LRR_113-34 aa

PF13855LRR_813-71 aa

PF12799LRR_413-47 aa

PF00560LRR_137-56 aa

PF22663Rhv_539-87 aa

PF00560LRR_160-80 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G481990	`PF00560`	LRR_1	1	10	6.2e-08	32.0
TkA03G481990	`PF00560`	LRR_1	13	34	6.2e-08	32.0
TkA03G481990	`PF13855`	LRR_8	13	71	4.9e-05	23.7
TkA03G481990	`PF12799`	LRR_4	13	47	0.073	14.1
TkA03G481990	`PF00560`	LRR_1	37	56	6.2e-08	32.0
TkA03G481990	`PF22663`	Rhv_5	39	87	0.28	11.6
TkA03G481990	`PF00560`	LRR_1	60	80	6.2e-08	32.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

View in Genome Browser

Gene Card