TkA03G481660 | RubberDandelionOmics

Gene overview

TkA03G481660

Reference: TK1151 Chr: Chr03 Coordinates: 120470587-120471974 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1232 bp · TkA03G481660|TK1151|cDNA

AAACAGTGATCGACCTAAATTGGAAAAGCGTGTTGATTCCACCTAAGGAAACCAAGTAGTTGTTAACCGGCGCGTGAGCTGGTTGGGGTTTTAATCCAACAGGTCCCACCGTCCATGTGCCCCCTCCTCTGTCTCCTCCCTCTCTCTCAATCATTACTCCTAATTTTCCCTCCTCCCTAACATTCAGTGCCACTCACCAGCTCATACACACACACACACACTCACAGTACTCCCCACTGTGTGTATATTATTATGTCAAC...

CDS

Download CDS FASTA

537 bp · TkA03G481660|TK1151|CDS

ATGTCAACATCCGACGCCAAGCAGCCGGCCGGTAACGGTGCTTTAGTGGTCAAGAAGCCGCCGGCGAAGGACCGACACAGCAAGGTTGATGGCCGTGGTCGCCGTATACGTATGCCTATCATCTGCGCCGCTAGGGTTTTCCAGCTCACCCGTGAGCTTGGCCACAAGTCTGATGGTCAGACAATCGAATGGCTGCTCCGGCAAGCGGAACCCTCGATTATCGCCGCTACCGGAACCGGCACAAATCCAGCTAGCTTCTC...

Protein

Download Protein FASTA

178 aa · TkA03G481660|TK1151|PROTEIN

MSTSDAKQPAGNGALVVKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTNPASFSGVSVALRNSNANCSLSAALEQKPPSNTYSLLLRLYSGNDSGRMKMALTETKKIIILICLPVQSPPPHLEDSGRYLPGQISVRCGASRRRKW

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G481660`
TK1151 ID	TkA03G481660
OH-1004 ID	LXL04_025606
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	91.200
Protein coverage (%)	TK1151 57.303 / OH-1004 37.687 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA03G481660

Location Chr03:120470587-120471974 (+)

Description Similar to TCP7: Transcription factor TCP7

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g23280`	Transcription factor TCP7.	No verified direct reference in this release
`At5g08330`	Transcription factor involved in the regulation of the circadian clock.	No verified direct reference in this release
`At1g72010`	Transcription factor TCP22.	No verified direct reference in this release
`At3g47620`	Transcription factor involved the regulation of plant development.	Transcription factor AtTCP14 regulates embryonic growth potential during seed germination in Arabidopsis thaliana.2008 · DOI: 10.1111/j.1365-313x.2007.03308.x TCP14 and TCP15 affect internode length and leaf shape in Arabidopsis.2011 · DOI: 10.1111/j.1365-313x.2011.04674.x Arabidopsis thaliana DOF6 negatively affects germination in non-after-ripened seeds and interacts with TCP14.2012 · DOI: 10.1093/jxb/err388 The Arabidopsis O-linked N-acetylglucosamine transferase SPINDLY interacts with class I TCPs to facilitate cytokinin responses in leaves and flowers.2012 · DOI: 10.1105/tpc.111.093518 The Arabidopsis immune adaptor SRFR1 interacts with TCP transcription factors that redundantly contribute to effector-triggered immunity.2014 · DOI: 10.1111/tpj.12527 The ubiquitin receptors DA1, DAR1, and DAR2 redundantly regulate endoreduplication by modulating the stability of TCP14/15 in Arabidopsis.2015 · DOI: 10.1105/tpc.114.132274 Pseudomonas syringae Type III Effector HopBB1 Promotes Host Transcriptional Repressor Degradation to Regulate Phytohormone Responses and Virulence.2017 · DOI: 10.1016/j.chom.2017.01.003 ORANGE Represses Chloroplast Biogenesis in Etiolated Arabidopsis Cotyledons via Interaction with TCP14.2019 · DOI: 10.1105/tpc.18.00290
`At1g69690`	Transcription factor involved the regulation of plant development.	TCP14 and TCP15 affect internode length and leaf shape in Arabidopsis.2011 · DOI: 10.1111/j.1365-313x.2011.04674.x The Arabidopsis O-linked N-acetylglucosamine transferase SPINDLY interacts with class I TCPs to facilitate cytokinin responses in leaves and flowers.2012 · DOI: 10.1105/tpc.111.093518 The Arabidopsis immune adaptor SRFR1 interacts with TCP transcription factors that redundantly contribute to effector-triggered immunity.2014 · DOI: 10.1111/tpj.12527 The ubiquitin receptors DA1, DAR1, and DAR2 redundantly regulate endoreduplication by modulating the stability of TCP14/15 in Arabidopsis.2015 · DOI: 10.1105/tpc.114.132274 TCP15 modulates cytokinin and auxin responses during gynoecium development in Arabidopsis.2015 · DOI: 10.1111/tpj.12992 Redox-Dependent Modulation of Anthocyanin Biosynthesis by the TCP Transcription Factor TCP15 during Exposure to High Light Intensity Conditions in Arabidopsis.2016 · DOI: 10.1104/pp.15.01016

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_025606 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0042752 regulation of circadian rhythm Biological Process

GO:0042753 positive regulation of circadian rhythm Biological Process

GO:0048510 regulation of timing of transition from vegetative to reproductive phase Biological Process

GO:0048511 rhythmic process Biological Process

GO:0048578 positive regulation of long-day photoperiodism, flowering Biological Process

GO:0005634 nucleus Cellular Component

GO:0000976 transcription cis-regulatory region binding Molecular Function

GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding Molecular Function

GO:0001216 DNA-binding transcription activator activity Molecular Function

GO:0003700 DNA-binding transcription factor activity Molecular Function

KEGG gene cross-reference

ath:AT1G35560

ath:AT1G58100

ath:AT1G72010

ath:AT5G08330

ath:AT5G23280

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.444

Rank 1 · TkA03G481660 · TK1151

Cytoplasm0.270

Rank 2 · TkA03G481660 · TK1151

Mitochondrion0.132

Rank 3 · TkA03G481660 · TK1151

Plastid0.097

Rank 4 · TkA03G481660 · TK1151

Cell membrane0.065

Rank 5 · TkA03G481660 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03634TCP22-109 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G481660	`PF03634`	TCP	22	109	1.2e-29	104.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FMX2`	Arabidopsis thaliana	sp\|Q9FMX2\|TCP7_ARATH Transcription factor TCP7	80.600%	Swiss-Prot	Medium
`Q9FTA2`	Arabidopsis thaliana	sp\|Q9FTA2\|TCP21_ARATH Transcription factor TCP21	92.100%	Swiss-Prot	Low
`Q9C7G4`	Arabidopsis thaliana	sp\|Q9C7G4\|TCP22_ARATH Transcription factor TCP22	52.100%	Swiss-Prot	High
`Q93Z00`	Arabidopsis thaliana	sp\|Q93Z00\|TCP14_ARATH Transcription factor TCP14	69.900%	Swiss-Prot	Low
`Q9C9L2`	Arabidopsis thaliana	sp\|Q9C9L2\|TCP15_ARATH Transcription factor TCP15	67.300%	Swiss-Prot	Medium

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