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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G479500
Reference: TK1151 Chr: Chr03 Coordinates: 119872821-119874873 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1803 bp · TkA03G479500|TK1151|cDNA

CAAAAATTCAATATTGCAACAAAATTTTAATATTGCAATCTTGAGTGAAATTTGGAAATTGACATCTGAAAAACGAATTTGTTGAAACCTATTTACATCTATGCGGAGCTCCGCCGCGAATACTCGCCGAGATGGCACTTGGCAGTGCAGTAAAGGCTAAAATCATCTGAACTACAATGCACTTCGGTGGCTCCTCCGCCATGAAGATGATAGTGGGGAAATTGCGAACTCCTCCGTTAGCCTCATGGAGTGAATTTTGT...

CDS

Download CDS FASTA

1506 bp · TkA03G479500|TK1151|CDS

ATGCACTTCGGTGGCTCCTCCGCCATGAAGATGATAGTGGGGAAATTGCGAACTCCTCCGTTAGCCTCATGGAGTGAATTTTGTTGCGGTTCGTCTAGGGCTCTAAGGGTTTTGCGTTACTCCACAAAAACCCTAACCCCCAATCACTTAGTCACTACATCTTCAACTGCTACGCCTACCACTCTGTACCACAGACTCGTCCGTTCTCAAGAACCTTCGATTACTCCGGTTCTAGACCAATGGGTAGGAGAAGGAAGACC...

Protein

Download Protein FASTA

501 aa · TkA03G479500|TK1151|PROTEIN

MHFGGSSAMKMIVGKLRTPPLASWSEFCCGSSRALRVLRYSTKTLTPNHLVTTSSTATPTTLYHRLVRSQEPSITPVLDQWVGEGRPVDQEDLHRIMKQLRKFSRYKHALEICRWMNNKPYLDVSHKSISIELDLISKVYGLKQAEDYFNKIPNNSRVWQVYGALLNCYAESKSLEKAESTMQKLRELGYSKSLTYNVMMGLYSTMLQYEKLDILMNEMEQKGIRIDKFTYGIRLNAYAKTSEIPKMEKLLLKMEADPEI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G479500
TK1151 IDTkA03G479500
OH-1004 IDLXL04_009868
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G479500
LocationChr03:119872821-119874873 (-)
DescriptionSimilar to At2g20710: Pentatricopeptide repeat-containing protein At2g20710, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g20710 Pentatricopeptide repeat-containing protein At2g20710, mitochondrial. No verified direct reference in this release
At5g27460 Pentatricopeptide repeat-containing protein At5g27460. No verified direct reference in this release
At1g02150 Pentatricopeptide repeat-containing protein At1g02150. No verified direct reference in this release
At4g02820 Pentatricopeptide repeat-containing protein At4g02820, mitochondrial. No verified direct reference in this release
At1g43010 Putative pentatricopeptide repeat-containing protein At1g43010. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_009868 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000963 mitochondrial RNA processing Biological Process
GO:0008380 RNA splicing Biological Process
GO:1903427 negative regulation of reactive oxygen species biosynthetic process Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003729 mRNA binding Molecular Function
KEGG gene cross-reference
ath:AT1G02150
ath:AT2G20710
ath:AT4G02820
ath:AT4G21705
ath:AT5G27460
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.822
Rank 1 · TkA03G479500 · TK1151
Plastid0.090
Rank 2 · TkA03G479500 · TK1151
Nucleus0.059
Rank 3 · TkA03G479500 · TK1151
Cytoplasm0.038
Rank 4 · TkA03G479500 · TK1151
Cell membrane0.011
Rank 5 · TkA03G479500 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF18436HECW1_helix5-18 aa
PF29070MSC6_N84-184 aa
PF13383Methyltransf_2291-156 aa
PF18436HECW1_helix94-117 aa
PF13041PPR_2100-119 aa
PF13424TPR_12105-113 aa
PF24760TPR_IF140_C151-186 aa
PF14559TPR_19153-187 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G479500PF18436HECW1_helix5180.3111.9
TkA03G479500PF29070MSC6_N841843.5e-1453.4
TkA03G479500PF13383Methyltransf_22911560.1212.6
TkA03G479500PF18436HECW1_helix941170.3111.9
TkA03G479500PF13041PPR_21001197.1e-2381.2
TkA03G479500PF13424TPR_121051130.04614.6
TkA03G479500PF24760TPR_IF140_C1511860.04814.8
TkA03G479500PF14559TPR_191531870.007517.3
TkA03G479500PF13424TPR_121601870.04614.6
TkA03G479500PF01535PPR1611893.6e-2380.8
TkA03G479500PF13041PPR_21621897.1e-2381.2
TkA03G479500PF13812PPR_31622042.9e-0937.6
TkA03G479500PF12854PPR_11621793e-0730.8
TkA03G479500PF20431E_motif1752250.00517.8
TkA03G479500PF13041PPR_21942407.1e-2381.2
TkA03G479500PF17177PPR_long1942903.3e-0627.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SKU6Arabidopsis thalianasp|Q9SKU6|PP166_ARATH Pentatricopeptide repeat-containing protein At2g20710, mitochondrial43.000%Swiss-ProtMedium
Q3E911Arabidopsis thalianasp|Q3E911|PP400_ARATH Pentatricopeptide repeat-containing protein At5g2746032.900%Swiss-ProtMedium
Q8LPS6Arabidopsis thalianasp|Q8LPS6|PPR3_ARATH Pentatricopeptide repeat-containing protein At1g0215030.800%Swiss-ProtMedium
Q9SY07Arabidopsis thalianasp|Q9SY07|PP302_ARATH Pentatricopeptide repeat-containing protein At4g02820, mitochondrial25.200%Swiss-ProtLow
Q9C545Arabidopsis thalianasp|Q9C545|PPR72_ARATH Putative pentatricopeptide repeat-containing protein At1g4301026.600%Swiss-ProtLow

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