TkA03G477520 | RubberDandelionOmics

Gene overview

TkA03G477520

Reference: TK1151 Chr: Chr03 Coordinates: 119370849-119374313 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

639 bp · TkA03G477520|TK1151|cDNA

TTATTGAAATCTCCATACACCTATAAATGCATACAGTTGGGATGATATAAAGCACAACTCCTCCCAAAATCCTTCACAACATCATTTACACAAACAAAGTTCTTTCATATTACCTTTCATTAAGAAAAAAAAGTAAACCTCAAACTTCATACCAAAATGGCTATTCGTATCCCCCGGATTATTCAGGCTAGAAAAGTTCTTGGCCGATCGTTGTCAAATGGAAGCCACTCATCATCATCCATAGACATCATCCCTAAAGG...

CDS

Download CDS FASTA

303 bp · TkA03G477520|TK1151|CDS

ATGGCTATTCGTATCCCCCGGATTATTCAGGCTAGAAAAGTTCTTGGCCGATCGTTGTCAAATGGAAGCCACTCATCATCATCCATAGACATCATCCCTAAAGGACATTTTGCAGTTTATGTTGGCGAGCAAGAGAAAAGACGATTTGTTGTTCCTGTATCATTATTGAACCAACCTTCATTCCAAGACCTGTTACGTCAATCAGAGGAAGAATTCGGATATGATCATCCAATGGGCGGCCTTACAATTCCATGCCGTGA...

Protein

Download Protein FASTA

100 aa · TkA03G477520|TK1151|PROTEIN

MAIRIPRIIQARKVLGRSLSNGSHSSSSIDIIPKGHFAVYVGEQEKRRFVVPVSLLNQPSFQDLLRQSEEEFGYDHPMGGLTIPCREDVFIDVACRLCSL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G477520`
TK1151 ID	TkA03G477520
OH-1004 ID	LXL04_009843
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	99.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA03G477520

Location Chr03:119370849-119374313 (+)

Description Similar to SAUR24: Auxin-responsive protein SAUR24

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g18080`	Functions as a positive effector of cell expansion through modulation of auxin transport.	No verified direct reference in this release
`At5g18050`	Functions as a positive effector of cell expansion through modulation of auxin transport.	No verified direct reference in this release
`At5g18060`	Functions as a positive effector of cell expansion through modulation of auxin transport.	No verified direct reference in this release
`At5g18020`	Functions as a positive effector of cell expansion through modulation of auxin transport.	No verified direct reference in this release
`At5g18030`	Functions as a positive effector of cell expansion through modulation of auxin transport.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_009843 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009733 response to auxin Biological Process

GO:0009734 auxin-activated signaling pathway Biological Process

GO:0009741 response to brassinosteroid Biological Process

GO:0030307 positive regulation of cell growth Biological Process

GO:2000012 regulation of auxin polar transport Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

KEGG gene cross-reference

ath:AT5G18010

ath:AT5G18020

ath:AT5G18050

ath:AT5G18060

ath:AT5G18080

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.541

Rank 1 · TkA03G477520 · TK1151

Nucleus0.379

Rank 2 · TkA03G477520 · TK1151

Cell membrane0.194

Rank 3 · TkA03G477520 · TK1151

Endoplasmic reticulum0.070

Rank 4 · TkA03G477520 · TK1151

Plastid0.049

Rank 5 · TkA03G477520 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02519Auxin_inducible10-97 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G477520	`PF02519`	Auxin_inducible	10	97	1.1e-23	84.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FK62`	Arabidopsis thaliana	sp\|Q9FK62\|SAU24_ARATH Auxin-responsive protein SAUR24	61.100%	Swiss-Prot	High
`Q9FJF7`	Arabidopsis thaliana	sp\|Q9FJF7\|SAU22_ARATH Auxin-responsive protein SAUR22	56.700%	Swiss-Prot	High
`Q9FJF6`	Arabidopsis thaliana	sp\|Q9FJF6\|SAU23_ARATH Auxin-responsive protein SAUR23	57.800%	Swiss-Prot	High
`Q9FJG0`	Arabidopsis thaliana	sp\|Q9FJG0\|SAU20_ARATH Auxin-responsive protein SAUR20	58.400%	Swiss-Prot	High
`Q9FJF9`	Arabidopsis thaliana	sp\|Q9FJF9\|SAU21_ARATH Auxin-responsive protein SAUR21	56.700%	Swiss-Prot	High

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