TkA03G477240 | RubberDandelionOmics

Gene overview

TkA03G477240

Reference: TK1151 Chr: Chr03 Coordinates: 119312787-119313421 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

573 bp · TkA03G477240|TK1151|cDNA

AAATCCTACACACCATCTTTCACAACAAAGAAATCCTTTTATATTGCCTTTCTTTACAAAAAGAAATTAAGGACGATACCCTTCATATATACATGGCTATTCGTATGCCCCGGATCATTAAATCAAAAAGAGTTCTTGGTCGATCATTGTCAAATGGAATCTGCTTATCCTCTTCTACAGACATCATCCCCAAAGGACATTTTGCAGTTTACGTTGGACCTGCTACGTCAATCAGAGGAAGAATTCGGATATGATCATCC...

CDS

Download CDS FASTA

333 bp · TkA03G477240|TK1151|CDS

AAATCCTACACACCATCTTTCACAACAAAGAAATCCTTTTATATTGCCTTTCTTTACAAAAAGAAATTAAGGACGATACCCTTCATATATACATGGCTATTCGTATGCCCCGGATCATTAAATCAAAAAGAGTTCTTGGTCGATCATTGTCAAATGGAATCTGCTTATCCTCTTCTACAGACATCATCCCCAAAGGACATTTTGCAGTTTACGTTGGACCTGCTACGTCAATCAGAGGAAGAATTCGGATATGATCATCC...

Protein

Download Protein FASTA

110 aa · TkA03G477240|TK1151|PROTEIN

KSYTPSFTTKKSFYIAFLYKKKLRTIPFIYTWLFVCPGSLNQKEFLVDHCQMESAYPLLQTSSPKDILQFTLDLLRQSEEEFGYDHPMGGLTIPCREDVFIDVVSCLCSL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G477240`
TK1151 ID	TkA03G477240
OH-1004 ID	LXL04_009834
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	94.700
Protein coverage (%)	TK1151 34.545 / OH-1004 38.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA03G477240

Location Chr03:119312787-119313421 (+)

Description Similar to ARG7: Indole-3-acetic acid-induced protein ARG7

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g03840`	Functions as a positive effector of cell expansion through modulation of auxin transport (By similarity).	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_009834 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009733 response to auxin Biological Process

GO:0009734 auxin-activated signaling pathway Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

KEGG gene cross-reference

ath:AT5G18020

ath:AT5G18050

ath:AT5G18080

gmx:100777479

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.462

Rank 1 · TkA03G477240 · TK1151

Nucleus0.390

Rank 2 · TkA03G477240 · TK1151

Mitochondrion0.187

Rank 3 · TkA03G477240 · TK1151

Endoplasmic reticulum0.073

Rank 4 · TkA03G477240 · TK1151

Cell membrane0.073

Rank 5 · TkA03G477240 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02519Auxin_inducible73-107 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G477240	`PF02519`	Auxin_inducible	73	107	1.4e-06	29.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SRW1`	Arabidopsis thaliana	sp\|Q9SRW1\|SAU27_ARATH Auxin-responsive protein SAUR27	50.800%	Swiss-Prot	Medium

JBrowse

View in Genome Browser

Gene Card