TkA03G477070 | RubberDandelionOmics

Gene overview

TkA03G477070

Reference: TK1151 Chr: Chr03 Coordinates: 119270948-119274580 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

930 bp · TkA03G477070|TK1151|cDNA

ATGATTTTAGAGGATGAGGGTAAAGTTGTGTGTGTGTATGTTCCGGTAGAAAATGTGGTCCCTAACCCGCCACCGATACAACCTGGTTCTCAGGAGTCCCTTGCGATAAGGCGTGCGCTGCGAAACCGACCAATACATTTCCGCCTTCGAGAATCTTTGGGGTTATATTTGCAGACTGTTGACCATGTTAATGCATCCCGCCTCATCCCCAAACTCTCGCAGTCACAACTCACAACTCACGAGTATCGGCCATCGCCGAC...

CDS

Download CDS FASTA

930 bp · TkA03G477070|TK1151|CDS

ATGATTTTAGAGGATGAGGGTAAAGTTGTGTGTGTGTATGTTCCGGTAGAAAATGTGGTCCCTAACCCGCCACCGATACAACCTGGTTCTCAGGAGTCCCTTGCGATAAGGCGTGCGCTGCGAAACCGACCAATACATTTCCGCCTTCGAGAATCTTTGGGGTTATATTTGCAGACTGTTGACCATGTTAATGCATCCCGCCTCATCCCCAAACTCTCGCAGTCACAACTCACAACTCACGAGTATCGGCCATCGCCGAC...

Protein

Download Protein FASTA

309 aa · TkA03G477070|TK1151|PROTEIN

MILEDEGKVVCVYVPVENVVPNPPPIQPGSQESLAIRRALRNRPIHFRLRESLGLYLQTVDHVNASRLIPKLSQSQLTTHEYRPSPTSRLPFFTAPIPPAPARQCLRQSSFTSGSSQASTSVDFSLQLQNDSRFPAQVHVYIAEIAPQNMRDSLGSVNQLSVTIGILLAYLMGLFLPWRVLAVIGTLPCIFLIPGLFFIPESPRWLAKMGFIEDCETSLQVLRGFDSDISSEFNEIKVVATAVTTGLVDKSGRRVLLMLS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G477070`
TK1151 ID	TkA03G477070
OH-1004 ID	LXL04_009838
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	69.300
Protein coverage (%)	TK1151 79.935 / OH-1004 96.916 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA03G477070

Location Chr03:119270948-119274580 (-)

Description Similar to At1g19450: Sugar transporter ERD6-like 4

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g19450`	Sugar transporter.	No verified direct reference in this release
`At1g75220`	Sugar transporter.	No verified direct reference in this release
`At1g08930`	Sugar transporter.	No verified direct reference in this release
`At1g54730`	Sugar transporter.	No verified direct reference in this release
`At3g05155`	Sugar transporter.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_009838 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009409 response to cold Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0009651 response to salt stress Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0010030 positive regulation of seed germination Biological Process

GO:0042593 glucose homeostasis Biological Process

GO:0055085 transmembrane transport Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0009705 plant-type vacuole membrane Cellular Component

KEGG gene cross-reference

ath:AT1G08930

ath:AT1G19450

ath:AT1G75220

ath:AT3G05155

ath:AT3G05400

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.305

Rank 1 · TkA03G477070 · TK1151

Cytoplasm0.201

Rank 2 · TkA03G477070 · TK1151

Nucleus0.173

Rank 3 · TkA03G477070 · TK1151

Cell membrane0.170

Rank 4 · TkA03G477070 · TK1151

Mitochondrion0.147

Rank 5 · TkA03G477070 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07690MFS_1139-205 aa

PF00083Sugar_tr140-237 aa

PF00083Sugar_tr237-278 aa

PF07690MFS_1239-275 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G477070	`PF07690`	MFS_1	139	205	3.3e-05	23.7
TkA03G477070	`PF00083`	Sugar_tr	140	237	8.2e-24	85.0
TkA03G477070	`PF00083`	Sugar_tr	237	278	8.2e-24	85.0
TkA03G477070	`PF07690`	MFS_1	239	275	3.3e-05	23.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q93YP9`	Arabidopsis thaliana	sp\|Q93YP9\|ERDL4_ARATH Sugar transporter ERD6-like 4	47.600%	Swiss-Prot	Low
`Q9FRL3`	Arabidopsis thaliana	sp\|Q9FRL3\|ERDL6_ARATH Sugar transporter ERD6-like 6	46.900%	Swiss-Prot	Low
`O04036`	Arabidopsis thaliana	sp\|O04036\|ERD6_ARATH Sugar transporter ERD6	53.800%	Swiss-Prot	Low
`Q3ECP7`	Arabidopsis thaliana	sp\|Q3ECP7\|ERDL5_ARATH Sugar transporter ERD6-like 5	52.900%	Swiss-Prot	Low
`Q7XA64`	Arabidopsis thaliana	sp\|Q7XA64\|ERDL9_ARATH Sugar transporter ERD6-like 9	50.500%	Swiss-Prot	Low

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