TkA03G474380 | RubberDandelionOmics

Gene overview

TkA03G474380

Reference: TK1151 Chr: Chr03 Coordinates: 118605143-118608388 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1284 bp · TkA03G474380|TK1151|cDNA

AAACATTCAATATGACGTATTAAAATAAAAATATTAAATAAATAATTACAAACACCCGTTGGAAAATGATTTTGACAAGCCTTTGAAGTCTCTAGACATACAATTTAACTCCCTCCATACACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATATACACACACTCAGTTCACATTTTAATGTTATTTTCAAGCATCTTTTTTTCACATTTCCCTCATACATACAAACTAACACATGGGTGCAG...

CDS

Download CDS FASTA

879 bp · TkA03G474380|TK1151|CDS

ATGGGTGCAGACCTAGGACATGTGGTACCAGGGTTTGGTTTACTTGTCGTTGGTTTTTGGCACCTTCTCAACCATATAAAACTTCATGTTCAAAACCCCAACACCTATCATTCCCTTCCATGGTTTCCTTCCACCAAGATAAGGTATATCGAACTCTACTTTATCATACTAGGTTCTTCCATGTTCATAGCTCAGGAGCTATTTATCGGGCCACATCGTCACCAACCGTTTGACACGGATGGCACCATTCCTTCGAACCA...

Protein

Download Protein FASTA

292 aa · TkA03G474380|TK1151|PROTEIN

MGADLGHVVPGFGLLVVGFWHLLNHIKLHVQNPNTYHSLPWFPSTKIRYIELYFIILGSSMFIAQELFIGPHRHQPFDTDGTIPSNHLHNFEHSLFALTFLVYAGFAIVLDKFVPIAQYELTQLLASIVFGQELLIFHLHSVDHMGVEGQYHMLLQILILISFITTLMGIGYRKSFVVGFIRSISLFFQGLWLIVMGFMLWTRSVIPKGCFLNLEKGHYVVRCHGEEAFQRAKALVNIEFSSYLIGVIIFAISLYLVMYK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G474380`
TK1151 ID	TkA03G474380
OH-1004 ID	LXL04_009809
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	99.300
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA03G474380`
Location	Chr03:118605143-118608388 (+)
Description	Protein of unknown function
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_009809` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	No functional description available
KEGG gene cross-reference	No functional description available

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.386

Rank 1 · TkA03G474380 · TK1151

Lysosome / Vacuole0.336

Rank 2 · TkA03G474380 · TK1151

Endoplasmic reticulum0.171

Rank 3 · TkA03G474380 · TK1151

Cytoplasm0.150

Rank 4 · TkA03G474380 · TK1151

Golgi apparatus0.099

Rank 5 · TkA03G474380 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04241DUF42343-62 aa

PF04819DUF71687-87 aa

PF14329DUF4386101-120 aa

PF04819DUF716120-256 aa

PF04241DUF423150-197 aa

PF14329DUF4386185-208 aa

PF04241DUF423231-259 aa

PF14329DUF4386232-267 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G474380	`PF04241`	DUF423	43	62	1.6	9.7
TkA03G474380	`PF04819`	DUF716	87	87	1.7e-49	167.7
TkA03G474380	`PF14329`	DUF4386	101	120	0.073	13.7
TkA03G474380	`PF04819`	DUF716	120	256	1.7e-49	167.7
TkA03G474380	`PF04241`	DUF423	150	197	1.6	9.7
TkA03G474380	`PF14329`	DUF4386	185	208	0.073	13.7
TkA03G474380	`PF04241`	DUF423	231	259	1.6	9.7
TkA03G474380	`PF14329`	DUF4386	232	267	0.073	13.7
TkA03G474380	`PF03356`	Pox_LP_H2	236	276	0.054	14.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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