TkA03G471940 | RubberDandelionOmics

Gene overview

TkA03G471940

Reference: TK1151 Chr: Chr03 Coordinates: 117955161-117961505 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1823 bp · TkA03G471940|TK1151|cDNA

AATGAAGTCATTTCATCTTCAACACAAATCAACATACCATTAATCGAATTCCATCTCGATCTAGTCATCACATACGTACTGAAAATCATGTGGACTTTTTTGGATCATATAATCATTTACATATTATTGCCGTTGTTTGTGGGTGCGGCGTTCCTGATCATCATATGGTACAGTTATACACCACCGACCACCACCAAGAAACTACCGCCGTCACCACCAACGTTGCCGATAATCGGCAACCTCCACCAATTGGGAGCACT...

CDS

Download CDS FASTA

1548 bp · TkA03G471940|TK1151|CDS

ATGTGGACTTTTTTGGATCATATAATCATTTACATATTATTGCCGTTGTTTGTGGGTGCGGCGTTCCTGATCATCATATGGTACAGTTATACACCACCGACCACCACCAAGAAACTACCGCCGTCACCACCAACGTTGCCGATAATCGGCAACCTCCACCAATTGGGAGCACTCGTCCACCACTCTTTCTTCTCTCTGGCAAAACGTTACGGCGACTCCCTGATGCTCCTCCACATCGGCTCAGTCCCAAGCCTGGTGGT...

Protein

Download Protein FASTA

515 aa · TkA03G471940|TK1151|PROTEIN

MWTFLDHIIIYILLPLFVGAAFLIIIWYSYTPPTTTKKLPPSPPTLPIIGNLHQLGALVHHSFFSLAKRYGDSLMLLHIGSVPSLVVSSTEAAREIMKTHDLTFASRPTTRMFRAISYNLKEITVAPYGEYWRQAKSILTLQLLSNKKVQSFDAMRETIIADCLSKITQSFSSNSPADLSDLFSSLTNDITCMATFGKTYNDGEIGRKFKKIMQEFSEVLGSFYFEDSIPQLAVVDRLTGLTAKVDRVAKDFDEFLQNVV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G471940`
TK1151 ID	TkA03G471940
OH-1004 ID	LXL04_009791
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	98.600
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA03G471940

Location Chr03:117955161-117961505 (+)

Description Similar to CYP736A117: Cytochrome P450 736A117

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g48280`	Cytochrome P450 71A25.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_009791 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0016114 terpenoid biosynthetic process Biological Process

GO:0035835 indole alkaloid biosynthetic process Biological Process

GO:0051762 sesquiterpene biosynthetic process Biological Process

GO:0000137 Golgi cis cisterna Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005789 endoplasmic reticulum membrane Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0016020 membrane Cellular Component

GO:0004497 monooxygenase activity Molecular Function

GO:0005506 iron ion binding Molecular Function

GO:0016491 oxidoreductase activity Molecular Function

GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen Molecular Function

KEGG gene cross-reference

ag:ADZ48681

ath:AT3G48280

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.921

Rank 1 · TkA03G471940 · TK1151

Cell membrane0.042

Rank 2 · TkA03G471940 · TK1151

Cytoplasm0.039

Rank 3 · TkA03G471940 · TK1151

Plastid0.035

Rank 4 · TkA03G471940 · TK1151

Golgi apparatus0.025

Rank 5 · TkA03G471940 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00067p45040-500 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G471940	`PF00067`	p450	40	500	8.8e-95	318.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9STK8`	Arabidopsis thaliana	sp\|Q9STK8\|C71AP_ARATH Cytochrome P450 71A25	45.900%	Swiss-Prot	Medium

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