TkA03G467560 | RubberDandelionOmics

Gene overview

TkA03G467560

Reference: TK1151 Chr: Chr03 Coordinates: 116786432-116789222 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1270 bp · TkA03G467560|TK1151|cDNA

AAAAAAGCTCTACTTTTTCTAAATCCCGCAAAAATCTATGAAGCTTTCATACTGTCCAAGCAACTGATTTTGAAGTTTTCATGCCTCCCAAACCAAACAAAACCCGCATAAAATTTACCAAAATCTTAATCTCTCTCAGACAATGCACAATTGATCACACATTCCCTCATTACCATTTTGATTTTATTTCATGGGTACCCGTTACGATTCTAATCCCTCAGATGGAGATGACTCTAACCCCTTTGCGGACTCAAGACCAG...

CDS

Download CDS FASTA

831 bp · TkA03G467560|TK1151|CDS

ATGGGTACCCGTTACGATTCTAATCCCTCAGATGGAGATGACTCTAACCCCTTTGCGGACTCAAGACCAGAACGTGCTGACTTCGGTCATGATTCTAAAATTGATATCTCTCTCGACAGTGCCACGGATTTGAGAGCTAAAGAGAAGGATCTTAAAGCCAAGGAAGCTGAACTGAAAAGGAGGGAAGAGGAATTGAAGAGAAAAGAGGATGCCATATCACGGGCTGGAATCATTGTAGACGTAAAAAATTGGCCACCATT...

Protein

Download Protein FASTA

276 aa · TkA03G467560|TK1151|PROTEIN

MGTRYDSNPSDGDDSNPFADSRPERADFGHDSKIDISLDSATDLRAKEKDLKAKEAELKRREEELKRKEDAISRAGIIVDVKNWPPFFPLIHHDIPKDIPVHLQRTQYLAFTTFLGIIACLVWNLVAVSAICIKGEDLDVWLLAVIYLITGVPGAYMLWYRPLYRAMRNDGAMMFGFFFFTYTCHILFCVYASVAPPMIFKGKSLTGILPAFDILHGSFPIGCLYFVGFALFALESAISIWVIQEVYRYFRGSGKAEQVK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G467560`
TK1151 ID	TkA03G467560
OH-1004 ID	LXL04_009743
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	93.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA03G467560

Location Chr03:116786432-116789222 (+)

Description Similar to SCAMP3: Secretory carrier-associated membrane protein 3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g20840`	Probably involved in membrane trafficking.	No verified direct reference in this release
`At1g61250`	Probably involved in membrane trafficking.	No verified direct reference in this release
`At1g03550`	Probably involved in membrane trafficking.	No verified direct reference in this release
`At1g11180`	Probably involved in membrane trafficking.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`UniProt: A2YMP7`	Probably involved in membrane trafficking.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_009743 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0015031 protein transport Biological Process

GO:0005634 nucleus Cellular Component

GO:0005768 endosome Cellular Component

GO:0005769 early endosome Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005802 trans-Golgi network Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0030658 transport vesicle membrane Cellular Component

GO:0032588 trans-Golgi network membrane Cellular Component

GO:0055038 recycling endosome membrane Cellular Component

KEGG gene cross-reference

ath:AT1G11180

ath:AT1G61250

ath:AT2G20840

dosa:Os07g0564600

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.355

Rank 1 · TkA03G467560 · TK1151

Cell membrane0.325

Rank 2 · TkA03G467560 · TK1151

Golgi apparatus0.302

Rank 3 · TkA03G467560 · TK1151

Endoplasmic reticulum0.165

Rank 4 · TkA03G467560 · TK1151

Lysosome / Vacuole0.151

Rank 5 · TkA03G467560 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF27825CEP162_helical_149-69 aa

PF04144SCAMP82-252 aa

PF06173DUF98699-183 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G467560	`PF27825`	CEP162_helical_1	49	69	0.58	11.0
TkA03G467560	`PF04144`	SCAMP	82	252	1.9e-52	178.7
TkA03G467560	`PF06173`	DUF986	99	183	0.047	14.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SKT3`	Arabidopsis thaliana	sp\|Q9SKT3\|SCAM1_ARATH Secretory carrier-associated membrane protein 1	61.100%	Swiss-Prot	High
`Q9M5P2`	Arabidopsis thaliana	sp\|Q9M5P2\|SCAM3_ARATH Secretory carrier-associated membrane protein 3	63.800%	Swiss-Prot	High
`Q9LR68`	Arabidopsis thaliana	sp\|Q9LR68\|SCAM2_ARATH Secretory carrier-associated membrane protein 2	57.500%	Swiss-Prot	High
`Q9SXA5`	Arabidopsis thaliana	sp\|Q9SXA5\|SCAM5_ARATH Secretory carrier-associated membrane protein 5	58.900%	Swiss-Prot	High
`A2YMP7`	Oryza sativa subsp. indica	sp\|A2YMP7\|SCAM1_ORYSI Putative secretory carrier-associated membrane protein 1	55.200%	Swiss-Prot	High

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