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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G467060
Reference: TK1151 Chr: Chr03 Coordinates: 116628403-116632598 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2815 bp · TkA03G467060|TK1151|cDNA

CATCTTCCACGAAAAGGGAAGAAAAAAAATAAGAAGCGACACCTGCAACCTCTGAAAACGTTGACTATCCTCTCTGGCCGTCTTCCTTCCTCGTTGACTCGCCGTTTCCCTGCCAACTCACCACCGTTGGCTCACTCGTCACTGTTGGTTCATCCTCTATCATCGCTCCAGATTCAGGTCTCCTTCTCCTCCTGCACGCAGAAAATTATCATCCAGTTTCTGCTTGAAATAAGAAAACCCAGCAGCCTCTGTTTCTATTT...

CDS

Download CDS FASTA

1545 bp · TkA03G467060|TK1151|CDS

ATGGTTGTGCTATCTGAAGTTCCAGAAGGATCTTCATCTTCTTCACCATCTCATGTTCATAGTTCATCAACTGGTGGTCAAAGTTCATCAACTCATGGTCCTAGATATGATGTGTTTTTAAGCTTTAGAGGTTTTGACACTCGTTATAGTTTCACTGATCACCTTTATAATGCCCTCATTAATGCCCATATCACTACCTTCTTGGATGATAAAGATATGGAAACAGGGGAAGATCTGACACCGGAATTGGAGAATGCAAT...

Protein

Download Protein FASTA

514 aa · TkA03G467060|TK1151|PROTEIN

MVVLSEVPEGSSSSSPSHVHSSSTGGQSSSTHGPRYDVFLSFRGFDTRYSFTDHLYNALINAHITTFLDDKDMETGEDLTPELENAIKSSQASIIVLSKNYATSTWCLDELVLILEQHKTSNHIVIPIFYHVEPSHVRWQEGSFEDAMAKHKQTMKEETYANKKSQWAQKIDRWTKALTKVADLKGNDVKGRLETEFIEDIVKDIHRRLRVLVSSAQSLLFGVDRDLNFVTSWLKDGTSHKADILTILGTGGIGKTSLAK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA03G467060
TK1151 IDTkA03G467060
OH-1004 IDLXL04_009735
Relationship / confidenceSequence Supported Annotation Or Model Conflict / Review
Protein identity (%)100.000
Protein coverage (%)TK1151 97.665 / OH-1004 41.080
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G467060
LocationChr03:116628403-116632598 (-)
DescriptionSimilar to RUN1: Disease resistance protein RUN1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g12010 TIR-NB-LRR receptor-like protein involved in plant defense.
Matching NLR Immune Receptors to Autoimmunity in camta3 Mutants Using Antimorphic NLR Alleles.2017 · DOI: 10.1016/j.chom.2017.03.005
At1g72930 Disease resistance protein. No verified direct reference in this release
At4g16990 TIR-NB-LRR receptor-like protein that confers resistance to the pathogens Leptosphaeria maculans (blackleg disease), Botrytis cinerea, Alternaria brassicicola and Alternaria brassicae.
RLM3, a TIR domain encoding gene involved in broad-range immunity of Arabidopsis to necrotrophic fungal pathogens.2008 · DOI: 10.1111/j.1365-313x.2008.03503.x

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_009735 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006952 defense response Biological Process
GO:0007165 signal transduction Biological Process
GO:0009626 plant-type hypersensitive response Biological Process
GO:0019677 NAD+ catabolic process Biological Process
GO:0043068 positive regulation of programmed cell death Biological Process
GO:0050832 defense response to fungus Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003953 NAD+ nucleosidase activity Molecular Function
GO:0005524 ATP binding Molecular Function
GO:0042803 protein homodimerization activity Molecular Function
KEGG gene cross-reference
ath:AT1G63880
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.444
Rank 1 · TkA03G467060 · TK1151
Cytoplasm0.333
Rank 2 · TkA03G467060 · TK1151
Nucleus0.169
Rank 3 · TkA03G467060 · TK1151
Endoplasmic reticulum0.116
Rank 4 · TkA03G467060 · TK1151
Extracellular0.069
Rank 5 · TkA03G467060 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01582TIR36-215 aa
PF13676TIR_238-134 aa
PF08937ThsB_TIR60-116 aa
PF00931NB-ARC66-103 aa
PF20720nSTAND366-101 aa
PF13401AAA_2267-97 aa
PF12076CER1-like_C82-138 aa
PF01637ATPase_2156-208 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G467060PF01582TIR362155.7e-48163.8
TkA03G467060PF13676TIR_2381343.9e-1866.8
TkA03G467060PF08937ThsB_TIR601160.1513.2
TkA03G467060PF00931NB-ARC661032.6e-1453.9
TkA03G467060PF20720nSTAND3661010.009516.4
TkA03G467060PF13401AAA_2267976.3e-0524.0
TkA03G467060PF12076CER1-like_C821380.06113.8
TkA03G467060PF01637ATPase_21562080.0007120.2
TkA03G467060PF08937ThsB_TIR1571740.1513.2
TkA03G467060PF13676TIR_21601753.9e-1866.8
TkA03G467060PF13191AAA_161631890.0002822.1
TkA03G467060PF13173AAA_141691850.1612.7
TkA03G467060PF24883NPHP3_N1962150.09113.7
TkA03G467060PF13191AAA_162213410.0002822.1
TkA03G467060PF01637ATPase_22253410.0007120.2
TkA03G467060PF00931NB-ARC2274012.6e-1453.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SZ66Arabidopsis thalianasp|Q9SZ66|DSC1_ARATH Disease resistance-like protein DSC133.500%Swiss-ProtMedium
Q9SSN3Arabidopsis thalianasp|Q9SSN3|TIR_ARATH Toll/interleukin-1 receptor-like protein35.900%Swiss-ProtMedium
Q9FT77Arabidopsis thalianasp|Q9FT77|RLM3_ARATH Disease resistance protein RLM344.900%Swiss-ProtMedium

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