TkA03G466820 | RubberDandelionOmics

Gene overview

TkA03G466820

Reference: TK1151 Chr: Chr03 Coordinates: 116564579-116564890 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

312 bp · TkA03G466820|TK1151|cDNA

ATGGCAAAGAGAGCGAAGATGGTTCAAATGTTATCGGAAAGATACACATGCATGGAAACTTTGCCGCTACATGGGTCATCTTTGCCTCTTTATGGATCTGGATTTCAGTTGGGTATGGAAACACATGCTGCCTCGTTAGATGAAGGGGTTCAAGGCGCCATGAAAGGTGGAGCAAGATTTGAGCAAAGCTATATCGGGATACCGATATACATGGATGATGATGAAGCCGAACGGTTTTGGTATGGTAGCTTCTGGCACAT...

CDS

Download CDS FASTA

312 bp · TkA03G466820|TK1151|CDS

ATGGCAAAGAGAGCGAAGATGGTTCAAATGTTATCGGAAAGATACACATGCATGGAAACTTTGCCGCTACATGGGTCATCTTTGCCTCTTTATGGATCTGGATTTCAGTTGGGTATGGAAACACATGCTGCCTCGTTAGATGAAGGGGTTCAAGGCGCCATGAAAGGTGGAGCAAGATTTGAGCAAAGCTATATCGGGATACCGATATACATGGATGATGATGAAGCCGAACGGTTTTGGTATGGTAGCTTCTGGCACAT...

Protein

Download Protein FASTA

103 aa · TkA03G466820|TK1151|PROTEIN

MAKRAKMVQMLSERYTCMETLPLHGSSLPLYGSGFQLGMETHAASLDEGVQGAMKGGARFEQSYIGIPIYMDDDEAERFWYGSFWHIDGGDGLSATPDLNLKL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G466820`
TK1151 ID	TkA03G466820
OH-1004 ID	LXL04_009729
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 57.865 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA03G466820

Location Chr03:116564579-116564890 (-)

Description Similar to ZFP4: Zinc finger protein 4

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g66140`	Acts as a negative regulator of abscisic acid (ABA) signaling during germination and early seedling development.	The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development.2014 · DOI: 10.1104/pp.113.234294

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_009729 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0009640 photomorphogenesis Biological Process

GO:0009738 abscisic acid-activated signaling pathway Biological Process

GO:0009788 negative regulation of abscisic acid-activated signaling pathway Biological Process

GO:0019760 glucosinolate metabolic process Biological Process

GO:0045892 negative regulation of DNA-templated transcription Biological Process

GO:0060860 regulation of floral organ abscission Biological Process

GO:0060862 negative regulation of floral organ abscission Biological Process

GO:0080050 regulation of seed development Biological Process

GO:1901347 negative regulation of secondary cell wall biogenesis Biological Process

GO:0005634 nucleus Cellular Component

GO:0009507 chloroplast Cellular Component

KEGG gene cross-reference

ath:AT1G24625

ath:AT1G66140

ath:AT1G80730

ath:AT5G25160

ath:AT5G57520

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.945

Rank 1 · TkA03G466820 · TK1151

Cytoplasm0.127

Rank 2 · TkA03G466820 · TK1151

Cell membrane0.038

Rank 3 · TkA03G466820 · TK1151

Endoplasmic reticulum0.036

Rank 4 · TkA03G466820 · TK1151

Plastid0.016

Rank 5 · TkA03G466820 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q39263`	Arabidopsis thaliana	sp\|Q39263\|ZFP4_ARATH Zinc finger protein 4	33.300%	Swiss-Prot	Medium

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