TkA03G455380 | RubberDandelionOmics

Gene overview

TkA03G455380

Reference: TK1151 Chr: Chr03 Coordinates: 113664807-113674894 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2751 bp · TkA03G455380|TK1151|cDNA

GGTCGTTCCTCTCCGAAGGCCGATGAATCCGAATCCAGCAGCTTCTCTGGAGACGAAGATGAAGAAGAGAAGCTCCGTAAGGAACATCTTGCAGAGACTGAACGACTAGGAAGAGAAACCGCCCTCCGTCTTCAAAAAGAACTAGAAGAAGACGAATCCAGAAGGATGGAGGAGCGGAGGCTGAAAGAACAAGAAGAAGCAGCAAGGCTGACTGCTCAACGACCCCTCATAACTCAGATCCAACGGGTTCCAACTACGGG...

CDS

Download CDS FASTA

2751 bp · TkA03G455380|TK1151|CDS

GGTCGTTCCTCTCCGAAGGCCGATGAATCCGAATCCAGCAGCTTCTCTGGAGACGAAGATGAAGAAGAGAAGCTCCGTAAGGAACATCTTGCAGAGACTGAACGACTAGGAAGAGAAACCGCCCTCCGTCTTCAAAAAGAACTAGAAGAAGACGAATCCAGAAGGATGGAGGAGCGGAGGCTGAAAGAACAAGAAGAAGCAGCAAGGCTGACTGCTCAACGACCCCTCATAACTCAGATCCAACGGGTTCCAACTACGGG...

Protein

Download Protein FASTA

916 aa · TkA03G455380|TK1151|PROTEIN

GRSSPKADESESSSFSGDEDEEEKLRKEHLAETERLGRETALRLQKELEEDESRRMEERRLKEQEEAARLTAQRPLITQIQRVPTTGRDIVPFMTYLLPEDDEVLDCPVSKNAALLPMMDPIKGETNVDVRMASEFKHSRDFINRHASIRAALFSRSRIIALHKIKARQFQNFQFFEYGIEREDGSSRIINSADFHRMNSADLLTLAYICRHRAETKLEIKYHYLTFRDIINAIIHDFGFEDAELYSEFKDAPPPQEPNT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G455380`
TK1151 ID	TkA03G455380
OH-1004 ID	LXL04_025653
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	86.800
Protein coverage (%)	TK1151 63.974 / OH-1004 40.303 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID	`TkA03G455380`
Location	Chr03:113664807-113674894 (-)
Description	Similar to Retrovirus-related Pol polyprotein from transposon TNT 1-94
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_025653` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0006281 DNA repair Biological Process GO:0006310 DNA recombination Biological Process GO:0006508 proteolysis Biological Process GO:0015074 DNA integration Biological Process GO:0032196 transposition Biological Process GO:0071897 DNA biosynthetic process Biological Process GO:0075523 viral translational frameshifting Biological Process GO:0005634 nucleus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0042575 DNA polymerase complex Cellular Component GO:0003676 nucleic acid binding Molecular Function GO:0003677 DNA binding Molecular Function
KEGG gene cross-reference	No functional description available

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.502

Rank 1 · TkA03G455380 · TK1151

Nucleus0.470

Rank 2 · TkA03G455380 · TK1151

Cell membrane0.058

Rank 3 · TkA03G455380 · TK1151

Mitochondrion0.054

Rank 4 · TkA03G455380 · TK1151

Endoplasmic reticulum0.047

Rank 5 · TkA03G455380 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23461ZMYND11_CC20-53 aa

PF14223Retrotran_gag_2370-508 aa

PF03264Cytochrom_NNT394-435 aa

PF20041DUF6443448-550 aa

PF10122Zn_ribbon_Com622-638 aa

PF00098zf-CCHC627-643 aa

PF30379SLU7_N628-642 aa

PF03264Cytochrom_NNT754-803 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G455380	`PF23461`	ZMYND11_CC	20	53	0.88	10.7
TkA03G455380	`PF14223`	Retrotran_gag_2	370	508	4.3e-14	53.3
TkA03G455380	`PF03264`	Cytochrom_NNT	394	435	0.18	12.3
TkA03G455380	`PF20041`	DUF6443	448	550	0.0021	19.0
TkA03G455380	`PF10122`	Zn_ribbon_Com	622	638	0.12	12.5
TkA03G455380	`PF00098`	zf-CCHC	627	643	3.8e-05	24.3
TkA03G455380	`PF30379`	SLU7_N	628	642	0.011	15.9
TkA03G455380	`PF03264`	Cytochrom_NNT	754	803	0.18	12.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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