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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G449710
Reference: TK1151 Chr: Chr03 Coordinates: 112189547-112190815 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1164 bp · TkA03G449710|TK1151|cDNA

ATGCATGGAACTCTGCGATTCAAAGTTGAAATCTTTAAGCAGTTTTTCAGGTTTTCAGCTTCTCATAACTTTTGTTCATTAAAATCCAATATACCCATCAATTTGAATGTAAAAACACTTAACCAGCTGCTTAATCAGCGACCACCGTTGTCCCAACTTAAGCAAGTACATGCGCAAGTCATCTCCCAATCACTTTCATCGTACTCCATTCTGATCGACTCTTTAATTCATTGCTATCTATCAACTAATAGCCTCACCTC...

CDS

Download CDS FASTA

1164 bp · TkA03G449710|TK1151|CDS

ATGCATGGAACTCTGCGATTCAAAGTTGAAATCTTTAAGCAGTTTTTCAGGTTTTCAGCTTCTCATAACTTTTGTTCATTAAAATCCAATATACCCATCAATTTGAATGTAAAAACACTTAACCAGCTGCTTAATCAGCGACCACCGTTGTCCCAACTTAAGCAAGTACATGCGCAAGTCATCTCCCAATCACTTTCATCGTACTCCATTCTGATCGACTCTTTAATTCATTGCTATCTATCAACTAATAGCCTCACCTC...

Protein

Download Protein FASTA

387 aa · TkA03G449710|TK1151|PROTEIN

MHGTLRFKVEIFKQFFRFSASHNFCSLKSNIPINLNVKTLNQLLNQRPPLSQLKQVHAQVISQSLSSYSILIDSLIHCYLSTNSLTSARTLFDQYPNYPPPILLWNLVIRSYSKLQHSPEPINLFRQLNALQNNPLVVPDKYTFTFFITSCTHQNSELLGTIVHGILIKNGHVSNLYIANSLINLYAVFRILHEARKVFDEMPERDVFSWTSLLDCGRYIDVLSYFHDMIRQPRGNSNPNEAVLVCALSACSNLGALDQG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA03G449710
TK1151 IDTkA03G449710
OH-1004 IDLXL04_009579
Relationship / confidenceRbh Sequence Supported / Probable
Protein identity (%)91.000
Protein coverage (%)TK1151 97.416 / OH-1004 72.154
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G449710
LocationChr03:112189547-112190815 (-)
DescriptionSimilar to PCMP-H61: Pentatricopeptide repeat-containing protein At5g66520
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g56550 Pentatricopeptide repeat-containing protein At3g56550. No verified direct reference in this release
At5g27110 Pentatricopeptide repeat-containing protein At5g27110. No verified direct reference in this release
At1g59720 Involved in multiple sites RNA editing events in chloroplasts.
Pentatricopeptide repeat proteins with the DYW motif have distinct molecular functions in RNA editing and RNA cleavage in Arabidopsis chloroplasts.2009 · DOI: 10.1105/tpc.108.064667
At1g50270 Pentatricopeptide repeat-containing protein At1g50270. No verified direct reference in this release
At4g38010 Pentatricopeptide repeat-containing protein At4g38010. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_009579 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006397 mRNA processing Biological Process
GO:0009451 RNA modification Biological Process
GO:0016554 cytidine to uridine editing Biological Process
GO:0031425 chloroplast RNA processing Biological Process
GO:0080156 mitochondrial mRNA modification Biological Process
GO:1900865 chloroplast RNA modification Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0003729 mRNA binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT2G20540
ath:AT2G29760
ath:AT4G37380
ath:AT5G66520
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.611
Rank 1 · TkA03G449710 · TK1151
Plastid0.176
Rank 2 · TkA03G449710 · TK1151
Nucleus0.048
Rank 3 · TkA03G449710 · TK1151
Cytoplasm0.040
Rank 4 · TkA03G449710 · TK1151
Cell membrane0.004
Rank 5 · TkA03G449710 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13812PPR_333-45 aa
PF13041PPR_235-45 aa
PF14559TPR_1938-59 aa
PF29070MSC6_N47-118 aa
PF12921ATP1362-106 aa
PF13041PPR_267-75 aa
PF12854PPR_167-75 aa
PF23276TPR_2471-88 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G449710PF13812PPR_333456.3e-0730.1
TkA03G449710PF13041PPR_235451e-2280.7
TkA03G449710PF14559TPR_1938590.09213.8
TkA03G449710PF29070MSC6_N471181.2e-0525.4
TkA03G449710PF12921ATP13621060.04414.4
TkA03G449710PF13041PPR_267751e-2280.7
TkA03G449710PF12854PPR_167751.8e-1350.7
TkA03G449710PF23276TPR_2471880.1412.7
TkA03G449710PF01535PPR74937.3e-2689.3
TkA03G449710PF13041PPR_274931e-2280.7
TkA03G449710PF14559TPR_19751060.09213.8
TkA03G449710PF23276TPR_24851270.1412.7
TkA03G449710PF13041PPR_21031511e-2280.7
TkA03G449710PF01535PPR1051277.3e-2689.3
TkA03G449710PF12854PPR_11371491.8e-1350.7
TkA03G449710PF13812PPR_31391546.3e-0730.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LXY5Arabidopsis thalianasp|Q9LXY5|PP284_ARATH Pentatricopeptide repeat-containing protein At3g5655032.600%Swiss-ProtMedium
O04659Arabidopsis thalianasp|O04659|PP398_ARATH Pentatricopeptide repeat-containing protein At5g2711031.000%Swiss-ProtMedium
Q0WQW5Arabidopsis thalianasp|Q0WQW5|PPR85_ARATH Pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial33.000%Swiss-ProtMedium
Q9SX45Arabidopsis thalianasp|Q9SX45|PPR75_ARATH Pentatricopeptide repeat-containing protein At1g5027030.500%Swiss-ProtMedium
Q9SZK1Arabidopsis thalianasp|Q9SZK1|PP355_ARATH Pentatricopeptide repeat-containing protein At4g3801030.300%Swiss-ProtMedium

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