Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1603 bp · TkA03G434460|TK1151|cDNA
GAAACCACATATGCTCTAACAGTACCCTTTCCGATATTCGTAATCCTTCTCTTGCTTTTACACCTGACATGACATGACATGGCGTACCACCATTGGCACGCAAACGGACAAGGGATCGCCATAATTACAGATGTCCCCGTTAACCGATCACCAAAACCCCTAAATTCTCCTTCAAAATCACAACATACCAGTTACCACCCGAGTTTCACCGGGAGTGGAAACAGCGAAACATGAAGGAAGCATTGGTGGTTTGCGGAGAG...
1344 bp · TkA03G434460|TK1151|CDS
ATGAAGGAAGCATTGGTGGTTTGCGGAGAGAAGAACTTAACGGTGGGACTGACGATTTGGGACATAGAAACAGGGGATCATCTTCTTCACATACCCACATGTGCTTCACACTTCCATGGGCTCACTTGTTTGAGAAATCAGTACTTGGTTGCCTCTCAAATTCACCGCCCTGGCTCCGTCGCCGGCGGCGTCGTCTTCACCTGGCCTTTCTCCAAGCCTCGTTCACCATTACGGAGCTATACAGTTGAAGCCATTGGGCC...
Protein
Download Protein FASTA447 aa · TkA03G434460|TK1151|PROTEIN
MKEALVVCGEKNLTVGLTIWDIETGDHLLHIPTCASHFHGLTCLRNQYLVASQIHRPGSVAGGVVFTWPFSKPRSPLRSYTVEAIGPLSSTNDGIYLAGGAISGNAYIWEVINGKLLKTWHAHNSPITCLAFSNDSSLLISASEDGMIVVWPMISLLDDKYSEPSHLSLNVTTDHKSFITGLLPSCNVSQSVFVSSSLDGTCKAWDIIKGTLLQTWSFPQPITATVLDPLERFLFCGSADGRIFMTSFDVGLMTEPCVDL...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA03G434460 |
|---|---|
| TK1151 ID | TkA03G434460 |
| OH-1004 ID | LXL04_009407 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 99.800 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA03G434460 |
|---|---|
| Location | Chr03:108103329-108107539 (+) |
| Description | Similar to RID3: Protein ROOT INITIATION DEFECTIVE 3 |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0000448 cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) Biological Process GO:0006261 DNA-templated DNA replication Biological Process GO:0006364 rRNA processing Biological Process GO:0007368 determination of left/right symmetry Biological Process GO:1902184 negative regulation of shoot apical meristem development Biological Process GO:0005634 nucleus Cellular Component GO:0005654 nucleoplasm Cellular Component GO:0005656 nuclear pre-replicative complex Cellular Component GO:0005730 nucleolus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0080008 Cul4-RING E3 ubiquitin ligase complex Cellular Component GO:0120293 dynein axonemal particle Cellular Component |
| KEGG gene cross-reference | ath:AT3G49180 bta:533356 dre:445819 hsa:57418 xla:733228 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF25047Beta-prop_TEP1_2nd3-47 aaPF23419WD40_RFWD33-33 aaPF25175Beta-prop_WDR54-52 aaPF24780WD40_MABP1-WDR62_1st5-45 aaPF23409Beta-prop_EML5-31 aaPF23760Beta-prop_DCAF125-32 aaPF23341PEP5_VPS11_N5-37 aaPF24814WD40_Prp199-53 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA03G434460 | PF25047 | Beta-prop_TEP1_2nd | 3 | 47 | 7.5e-15 | 55.5 |
| TkA03G434460 | PF23419 | WD40_RFWD3 | 3 | 33 | 8e-07 | 29.4 |
| TkA03G434460 | PF25175 | Beta-prop_WDR5 | 4 | 52 | 9.6e-27 | 94.7 |
| TkA03G434460 | PF24780 | WD40_MABP1-WDR62_1st | 5 | 45 | 4.3e-09 | 36.8 |
| TkA03G434460 | PF23409 | Beta-prop_EML | 5 | 31 | 1.8e-07 | 31.7 |
| TkA03G434460 | PF23760 | Beta-prop_DCAF12 | 5 | 32 | 0.00082 | 19.1 |
| TkA03G434460 | PF23341 | PEP5_VPS11_N | 5 | 37 | 0.033 | 14.0 |
| TkA03G434460 | PF24814 | WD40_Prp19 | 9 | 53 | 2.8e-20 | 73.3 |
| TkA03G434460 | PF24017 | Beta-prop_SCAP | 15 | 34 | 8.2e-07 | 28.9 |
| TkA03G434460 | PF25172 | Beta-prop_WDR3_2nd | 16 | 36 | 6.8e-10 | 39.4 |
| TkA03G434460 | PF25174 | Beta-prop_THOC3 | 17 | 35 | 9.4e-21 | 74.7 |
| TkA03G434460 | PF24807 | WD40_CDC20-Fz | 17 | 35 | 1.7e-16 | 61.1 |
| TkA03G434460 | PF24805 | EIF3I | 17 | 33 | 1.3e-14 | 54.8 |
| TkA03G434460 | PF25171 | Beta-prop_WDR36-Utp21_1st | 17 | 49 | 6.6e-11 | 42.9 |
| TkA03G434460 | PF25178 | Beta-prop_WDR41 | 18 | 44 | 7.8e-10 | 38.8 |
| TkA03G434460 | PF25391 | WD40_Gbeta | 18 | 28 | 5.5e-09 | 36.2 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.