TkA03G434020 | RubberDandelionOmics

Gene overview

TkA03G434020

Reference: TK1151 Chr: Chr03 Coordinates: 107980803-107985643 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1557 bp · TkA03G434020|TK1151|cDNA

TGTAGGGGTGTGGTCCCAGAATTGACTGGTGGGTGTAATAAAGGCAAGGGTAATTTAGTACTTTCAAAGGAAAGAAGTTGTCCTTGGGTTCTTTTACTATCTAGGTCAAATGAAAATAAAGATTGGTGTGTAAAAACATATCAAGATTTGCATACCTGTTTGCAAACAAGGTCAGTGCGCGTCTGCTCATCTCAGTTTTTAGCTACCAATATTTTGCAGCAAATTGAAAGCAATCCAAATATCCCTGCACATGCTTTACA...

CDS

Download CDS FASTA

1557 bp · TkA03G434020|TK1151|CDS

TGTAGGGGTGTGGTCCCAGAATTGACTGGTGGGTGTAATAAAGGCAAGGGTAATTTAGTACTTTCAAAGGAAAGAAGTTGTCCTTGGGTTCTTTTACTATCTAGGTCAAATGAAAATAAAGATTGGTGTGTAAAAACATATCAAGATTTGCATACCTGTTTGCAAACAAGGTCAGTGCGCGTCTGCTCATCTCAGTTTTTAGCTACCAATATTTTGCAGCAAATTGAAAGCAATCCAAATATCCCTGCACATGCTTTACA...

Protein

Download Protein FASTA

518 aa · TkA03G434020|TK1151|PROTEIN

CRGVVPELTGGCNKGKGNLVLSKERSCPWVLLLSRSNENKDWCVKTYQDLHTCLQTRSVRVCSSQFLATNILQQIESNPNIPAHALHEELQKKYSLAISKMKVFRAKALAKKYVFGDYEKQYGLLRDYAMELKSKNPGTTIKIDVHSEPNMYSETRIFKRIYVCLGALKEGFKAGLRDFIGLDGSFLKGPFPGQILSVVGIDSNNGIYPGILPAIAKVFPVVEHRFCLRHVFENLKLGHKGDELREAVWKVSKVTSIPGF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G434020`
TK1151 ID	TkA03G434020
OH-1004 ID	LXL04_030815
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	85.600
Protein coverage (%)	TK1151 100.000 / OH-1004 66.136 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID	`TkA03G434020`
Location	Chr03:107980803-107985643 (+)
Description	Similar to FRS6: Protein FAR1-RELATED SEQUENCE 6
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_030815` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0006355 regulation of DNA-templated transcription Biological Process GO:0005634 nucleus Cellular Component GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference	ath:AT1G52520 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.938

Rank 1 · TkA03G434020 · TK1151

Cytoplasm0.086

Rank 2 · TkA03G434020 · TK1151

Cell membrane0.022

Rank 3 · TkA03G434020 · TK1151

Endoplasmic reticulum0.018

Rank 4 · TkA03G434020 · TK1151

Mitochondrion0.016

Rank 5 · TkA03G434020 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF22219DUF3829_2nd70-109 aa

PF10551MULE86-120 aa

PF10551MULE180-209 aa

PF10551MULE211-234 aa

PF22219DUF3829_2nd226-281 aa

PF04434SWIM377-393 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G434020	`PF22219`	DUF3829_2nd	70	109	0.12	13.2
TkA03G434020	`PF10551`	MULE	86	120	3.2e-05	24.9
TkA03G434020	`PF10551`	MULE	180	209	3.2e-05	24.9
TkA03G434020	`PF10551`	MULE	211	234	3.2e-05	24.9
TkA03G434020	`PF22219`	DUF3829_2nd	226	281	0.12	13.2
TkA03G434020	`PF04434`	SWIM	377	393	0.00056	20.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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