TkA03G433710 | RubberDandelionOmics

Gene overview

TkA03G433710

Reference: TK1151 Chr: Chr03 Coordinates: 107903711-107907200 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2663 bp · TkA03G433710|TK1151|cDNA

CAAATATAGCATATGTTGGTATTTTATTTACAAAAATTAACTAAATCACTAATGCTTCTCGTAAGAAATGTAAATCTGGGTTTATCTGAAGGATAAGCAAAATATAGTGATTTTTTGTAACGTTTGATTATTAATAATCATTGATCTATGACCATATCCTCAAAAATAAATTTTGAATGCAGAATAATGATCATCCCGTGCTGGTATATTTTCGCAACAAATTTCGACTAATCCGTTAATAGTCCAAATGGCGACTCCGT...

CDS

Download CDS FASTA

1860 bp · TkA03G433710|TK1151|CDS

ATGAAGATCTTGTCTTCAATCGCCGTCTTTTCAATATCAATCTTTGTTGTATTAGCATCAACTCATTTTGTCAAAGGTAATATTGAAGTCACGGAACAACCCTTGTCCAAAATCGGAATTCACAGCGCCGTCTTTGCTCTCCGTGATGACGCATCCATTAAAGCTAATCCTACTGTTCTTGGCTTAAAGGGTGAAGATGTTGATTGGGTGACGATCGAGCTTCAACACCCAAAACCATCGAATGATGATTGGGTTGGAGT...

Protein

Download Protein FASTA

619 aa · TkA03G433710|TK1151|PROTEIN

MKILSSIAVFSISIFVVLASTHFVKGNIEVTEQPLSKIGIHSAVFALRDDASIKANPTVLGLKGEDVDWVTIELQHPKPSNDDWVGVFSPANFNGSTCYFENDTKLQAPYICSAPIKYTFANYSNWEYAKTGNSTLKLRLINQRADFSFALFSGGLSNPKLIAHSNFISFANPKAPVYPRLALGKSWNEMTVTWTSGYNINEATPFVEWGVKGGQRIRVPAGTLTFHQNSMCGSPARTVGWRDPGFIHTSFLEKLWPNTK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G433710`
TK1151 ID	TkA03G433710
OH-1004 ID	LXL04_025115
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	70.200
Protein coverage (%)	TK1151 94.830 / OH-1004 47.872 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA03G433710

Location Chr03:107903711-107907200 (+)

Description Similar to PAP1: Probable inactive purple acid phosphatase 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g50400`	Probable inactive purple acid phosphatase 27.	No verified direct reference in this release
`At4g24890`	Probable inactive purple acid phosphatase 24.	No verified direct reference in this release
`At1g13750`	Probable inactive purple acid phosphatase 1.	No verified direct reference in this release
`At1g13900`	Probable inactive purple acid phosphatase 2.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_025115 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0005576 extracellular region Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0003993 acid phosphatase activity Molecular Function

GO:0046872 metal ion binding Molecular Function

KEGG gene cross-reference

ath:AT1G13750

ath:AT4G24890

ath:AT5G50400

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.365

Rank 1 · TkA03G433710 · TK1151

Lysosome / Vacuole0.215

Rank 2 · TkA03G433710 · TK1151

Cell membrane0.157

Rank 3 · TkA03G433710 · TK1151

Cytoplasm0.117

Rank 4 · TkA03G433710 · TK1151

Endoplasmic reticulum0.096

Rank 5 · TkA03G433710 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12850Metallophos_218-30 aa

PF00149Metallophos22-65 aa

PF17808fn3_PAP53-172 aa

PF16656Pur_ac_phosph_N177-284 aa

PF00149Metallophos296-511 aa

PF12850Metallophos_2323-518 aa

PF16656Pur_ac_phosph_N357-391 aa

PF25670Phage_tail_C_2464-524 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G433710	`PF12850`	Metallophos_2	18	30	0.0047	17.7
TkA03G433710	`PF00149`	Metallophos	22	65	1.4e-17	65.5
TkA03G433710	`PF17808`	fn3_PAP	53	172	1.5e-45	154.7
TkA03G433710	`PF16656`	Pur_ac_phosph_N	177	284	5.7e-12	46.8
TkA03G433710	`PF00149`	Metallophos	296	511	1.4e-17	65.5
TkA03G433710	`PF12850`	Metallophos_2	323	518	0.0047	17.7
TkA03G433710	`PF16656`	Pur_ac_phosph_N	357	391	5.7e-12	46.8
TkA03G433710	`PF25670`	Phage_tail_C_2	464	524	0.0052	17.6
TkA03G433710	`PF14008`	Metallophos_C	536	595	4.8e-17	63.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q5MAU8`	Arabidopsis thaliana	sp\|Q5MAU8\|PPA27_ARATH Probable inactive purple acid phosphatase 27	72.200%	Swiss-Prot	High
`Q8H1R2`	Arabidopsis thaliana	sp\|Q8H1R2\|PPA24_ARATH Probable inactive purple acid phosphatase 24	69.300%	Swiss-Prot	High
`Q9LMX4`	Arabidopsis thaliana	sp\|Q9LMX4\|PPA1_ARATH Probable inactive purple acid phosphatase 1	67.200%	Swiss-Prot	High
`Q9LMG7`	Arabidopsis thaliana	sp\|Q9LMG7\|PPA2_ARATH Probable inactive purple acid phosphatase 2	29.600%	Swiss-Prot	Low

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