TkA03G426970 | RubberDandelionOmics

Gene overview

TkA03G426970

Reference: TK1151 Chr: Chr03 Coordinates: 106232244-106234068 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1321 bp · TkA03G426970|TK1151|cDNA

ATATAAAACTACACATTTCATAACAAAGAAAAAATAGAGAGAGCAAGACAAGTGCCATTTATCTATACACAATCGATTTCCTAGTCTGTGAAAGAGGAGAGATAAGAAATTACTAATTAATCAAAGAGATGACTATGAGCTTGGCTCATCTCACCCTTGCTTTTGGCCTTCTTGGCAATATCGTTTCATTTATGGTATTTCTAGCACCAATACCGACATTCTACAAAGTCTATAAGAAGAAATCAACAGAAGGGTTTCAA...

CDS

Download CDS FASTA

894 bp · TkA03G426970|TK1151|CDS

ATGACTATGAGCTTGGCTCATCTCACCCTTGCTTTTGGCCTTCTTGGCAATATCGTTTCATTTATGGTATTTCTAGCACCAATACCGACATTCTACAAAGTCTATAAGAAGAAATCAACAGAAGGGTTTCAATCAGCGCCTTATGTAGTGGGGTTATTTAGTGCGATGCTTTGGATATATTACGCGTTTCTTAAGACCAATGTCATGCTTCTCATCACCATAAATGCAGTTGGCTGCTTCATTGAAACCTTATATATTTG...

Protein

Download Protein FASTA

297 aa · TkA03G426970|TK1151|PROTEIN

MTMSLAHLTLAFGLLGNIVSFMVFLAPIPTFYKVYKKKSTEGFQSAPYVVGLFSAMLWIYYAFLKTNVMLLITINAVGCFIETLYICFFLFYAPKKARMESMKLIVLLIVLGFGLIVVLTELLASGANRAVIVGWICLVFSLCVFVAPMGVVRQVIKTKSVEYMPILLSTALTISAVMWFFYGLLLRDFNIAIPNVLGFTFGILQMILFFVYKNKKPVINTEKISTLEAKISNMEEQKIPELKDQKIIDIVKLGTLIHSD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G426970`
TK1151 ID	TkA03G426970
OH-1004 ID	LXL04_009322
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	75.900
Protein coverage (%)	TK1151 99.327 / OH-1004 99.306 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA03G426970

Location Chr03:106232244-106234068 (+)

Description Similar to SWEET10: Bidirectional sugar transporter SWEET10

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g48740`	Mediates both low-affinity uptake and efflux of sugar across the plasma membrane.	Functional role of oligomerization for bacterial and plant SWEET sugar transporter family.2013 · DOI: 10.1073/pnas.1311244110 A cascade of sequentially expressed sucrose transporters in the seed coat and endosperm provides nutrition for the Arabidopsis embryo.2015 · DOI: 10.1105/tpc.114.134585
`At5g23660`	Mediates both low-affinity uptake and efflux of sugar across the plasma membrane.	No verified direct reference in this release
`At5g50790`	Mediates both low-affinity uptake and efflux of sugar across the plasma membrane.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`UniProt: B8BKP4`	Mediates both low-affinity uptake and efflux of sugar across the plasma membrane.	No verified direct reference in this release
`Os11g0508600`	Mediates both low-affinity uptake and efflux of sugar across the plasma membrane.	Sugar transporters for intercellular exchange and nutrition of pathogens.2010 · DOI: 10.1038/nature09606 Five phylogenetically close rice SWEET genes confer TAL effector-mediated susceptibility to Xanthomonas oryzae pv. oryzae.2013 · DOI: 10.1111/nph.12411
`Os12g0476200`	Mediates both low-affinity uptake and efflux of sugar across the plasma membrane.	No verified direct reference in this release
`UniProt: A2X5B4`	Mediates both low-affinity uptake and efflux of sugar across the plasma membrane.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_009322 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0008643 carbohydrate transport Biological Process

GO:0009793 embryo development ending in seed dormancy Biological Process

GO:0010431 seed maturation Biological Process

GO:0015770 sucrose transport Biological Process

GO:0048571 long-day photoperiodism Biological Process

GO:0051260 protein homooligomerization Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016020 membrane Cellular Component

GO:0008515 sucrose transmembrane transporter activity Molecular Function

GO:0051119 sugar transmembrane transporter activity Molecular Function

KEGG gene cross-reference

ath:AT5G23660

ath:AT5G50790

dosa:Os11g0508600

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.649

Rank 1 · TkA03G426970 · TK1151

Endoplasmic reticulum0.147

Rank 2 · TkA03G426970 · TK1151

Lysosome / Vacuole0.112

Rank 3 · TkA03G426970 · TK1151

Cytoplasm0.096

Rank 4 · TkA03G426970 · TK1151

Golgi apparatus0.067

Rank 5 · TkA03G426970 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03083MtN3_slv12-96 aa

PF04193PQ-loop14-65 aa

PF22258DUF694919-59 aa

PF04193PQ-loop71-90 aa

PF04193PQ-loop131-146 aa

PF03083MtN3_slv132-216 aa

PF22258DUF6949138-184 aa

PF04193PQ-loop155-187 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G426970	`PF03083`	MtN3_slv	12	96	2.1e-53	179.0
TkA03G426970	`PF04193`	PQ-loop	14	65	0.00048	20.5
TkA03G426970	`PF22258`	DUF6949	19	59	0.026	15.5
TkA03G426970	`PF04193`	PQ-loop	71	90	0.00048	20.5
TkA03G426970	`PF04193`	PQ-loop	131	146	0.00048	20.5
TkA03G426970	`PF03083`	MtN3_slv	132	216	2.1e-53	179.0
TkA03G426970	`PF22258`	DUF6949	138	184	0.026	15.5
TkA03G426970	`PF04193`	PQ-loop	155	187	0.00048	20.5
TkA03G426970	`PF04193`	PQ-loop	196	209	0.00048	20.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SMM5`	Arabidopsis thaliana	sp\|Q9SMM5\|SWT11_ARATH Bidirectional sugar transporter SWEET11	54.000%	Swiss-Prot	High
`O82587`	Arabidopsis thaliana	sp\|O82587\|SWT12_ARATH Bidirectional sugar transporter SWEET12	53.500%	Swiss-Prot	High
`Q9LUE3`	Arabidopsis thaliana	sp\|Q9LUE3\|SWT10_ARATH Bidirectional sugar transporter SWEET10	43.600%	Swiss-Prot	Medium
`B8BKP4`	Oryza sativa subsp. indica	sp\|B8BKP4\|SWT14_ORYSI Bidirectional sugar transporter SWEET14	61.600%	Swiss-Prot	High
`Q2R3P9`	Oryza sativa subsp. japonica	sp\|Q2R3P9\|SWT14_ORYSJ Bidirectional sugar transporter SWEET14	61.600%	Swiss-Prot	High
`Q2QR07`	Oryza sativa subsp. japonica	sp\|Q2QR07\|SWT13_ORYSJ Bidirectional sugar transporter SWEET13	60.600%	Swiss-Prot	High
`A2X5B4`	Oryza sativa subsp. indica	sp\|A2X5B4\|SWT15_ORYSI Bidirectional sugar transporter SWEET15	44.000%	Swiss-Prot	Medium

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