Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1722 bp · TkA03G415860|TK1151|cDNA
CGGAAGCCGAATGACATGACCCGATTTTAAATACAGACGAGGAGGAGTGGTGGGGAGCGGTTATCGGAGAACTAGACTCTGTTTGACTTCACAAAGACGGATGGCTGCTAGCGACATTGGCGACGAGACGAGCGACATGGACGAGCAAGAGCAAGAAGAGGCTTTGGTGGCTTTAATCGAACACCGTACCAAAGAAGTTGAACATCTCCGTATGCGTGTAGCCTATTATGAATCCGAGCTTGTTGAATCTGAGAAAAAAT...
1578 bp · TkA03G415860|TK1151|CDS
ATGGCTGCTAGCGACATTGGCGACGAGACGAGCGACATGGACGAGCAAGAGCAAGAAGAGGCTTTGGTGGCTTTAATCGAACACCGTACCAAAGAAGTTGAACATCTCCGTATGCGTGTAGCCTATTATGAATCCGAGCTTGTTGAATCTGAGAAAAAATTGGAGGAAACACAAGGCCAATTGGCTCGCCTTCGAAGTCGAGCATCTACAAGATCAATTGGAAGCAGTATAAGAGTTGAAGAAGAAATATCAACTAGTCC...
Protein
Download Protein FASTA525 aa · TkA03G415860|TK1151|PROTEIN
MAASDIGDETSDMDEQEQEEALVALIEHRTKEVEHLRMRVAYYESELVESEKKLEETQGQLARLRSRASTRSIGSSIRVEEEISTSPLKITNDKPSDKSNGTSCDSKTIKTKPKPLLVIPGMNPKASQSAPLKMVEYDKASSQRESQGYGVLTKQEAAESQAKGTKRKRKSKENGHKDLSEVICSCSSPITITAISHHIPSQHKRKLRSLVLCPTNDQLFATSALDGIVNMWQIEGRGSHAQLVNSINVASLTQRRWPED...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA03G415860 |
|---|---|
| TK1151 ID | TkA03G415860 |
| OH-1004 ID | LXL04_009286 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 99.600 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA03G415860 |
|---|---|
| Location | Chr03:103441390-103444401 (-) |
| Description | Similar to MSI1: Histone-binding protein MSI1 |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0000122 negative regulation of transcription by RNA polymerase II Biological Process GO:0000209 protein polyubiquitination Biological Process GO:0006260 DNA replication Biological Process GO:0006281 DNA repair Biological Process GO:0006310 DNA recombination Biological Process GO:0006325 chromatin organization Biological Process GO:0006335 DNA replication-dependent chromatin assembly Biological Process GO:0006338 chromatin remodeling Biological Process GO:0006351 DNA-templated transcription Biological Process GO:0006355 regulation of DNA-templated transcription Biological Process GO:0006511 ubiquitin-dependent protein catabolic process Biological Process GO:0006513 protein monoubiquitination Biological Process |
| KEGG gene cross-reference | ath:AT5G58230 dme:Dmel_CG4236 dosa:Os03g0640100 gga:395390 xtr:395039 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF24796WDR558-50 aaPF16529Ge1_WD409-50 aaPF24922ACBP4_C17-69 aaPF29090PEA2_C23-99 aaPF04791LMBR129-110 aaPF23419WD40_RFWD350-109 aaPF24817WD40_WDHD1_1st184-340 aaPF24796WDR55194-234 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA03G415860 | PF24796 | WDR55 | 8 | 50 | 1.5e-09 | 38.1 |
| TkA03G415860 | PF16529 | Ge1_WD40 | 9 | 50 | 0.12 | 12.0 |
| TkA03G415860 | PF24922 | ACBP4_C | 17 | 69 | 0.35 | 11.9 |
| TkA03G415860 | PF29090 | PEA2_C | 23 | 99 | 0.58 | 10.9 |
| TkA03G415860 | PF04791 | LMBR1 | 29 | 110 | 0.39 | 10.3 |
| TkA03G415860 | PF23419 | WD40_RFWD3 | 50 | 109 | 9.6e-05 | 22.6 |
| TkA03G415860 | PF24817 | WD40_WDHD1_1st | 184 | 340 | 2e-17 | 64.0 |
| TkA03G415860 | PF24796 | WDR55 | 194 | 234 | 1.5e-09 | 38.1 |
| TkA03G415860 | PF25047 | Beta-prop_TEP1_2nd | 197 | 236 | 5.1e-08 | 33.1 |
| TkA03G415860 | PF24814 | WD40_Prp19 | 198 | 293 | 1.1e-18 | 68.0 |
| TkA03G415860 | PF23775 | Beta-prop_RIG_2nd | 198 | 239 | 3.7e-13 | 50.2 |
| TkA03G415860 | PF24807 | WD40_CDC20-Fz | 200 | 442 | 2.1e-15 | 57.5 |
| TkA03G415860 | PF25168 | Beta-prop_WDR36-Utp21_2nd | 200 | 291 | 2.2e-08 | 34.5 |
| TkA03G415860 | PF25174 | Beta-prop_THOC3 | 201 | 299 | 6.9e-24 | 85.0 |
| TkA03G415860 | PF00400 | WD40 | 201 | 232 | 2.6e-13 | 50.6 |
| TkA03G415860 | PF29037 | DSE1_N | 201 | 252 | 3.8e-08 | 33.5 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.