TkA03G413670 | RubberDandelionOmics

Gene overview

TkA03G413670

Reference: TK1151 Chr: Chr03 Coordinates: 102878396-102880369 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1294 bp · TkA03G413670|TK1151|cDNA

CCGGTTTTCCCTATAAAAATATGTAAAAGTACAAGGAAATCTGCATCAACCCATCTACGTTGCGACCGTCCACCCAAATATCGGTTGACATTCTATCTCCATCTCTATCGAAGCTTGCAGAAAAAGCTTGGTTAATCTATCGGTTTCTTGAAACAATCTTAATCTTCTCTCCAGTTTTCCACCATGATGAAGGTCCCAGACCACCAAGTTGCAGGACACGTAGCTGGAGCTGGTAAACTCGGTCCTCTCGTAGACGATTC...

CDS

Download CDS FASTA

858 bp · TkA03G413670|TK1151|CDS

ATGATGAAGGTCCCAGACCACCAAGTTGCAGGACACGTAGCTGGAGCTGGTAAACTCGGTCCTCTCGTAGACGATTCAGGTCGTTTCTACAAACCACTCCAAGACGGTACACGTGGAATAGAAGAAGTCTCCTTCTACGAATCCTTCACTTCCAACTCTCAAATCCCACAACAAATCCGTAAGTTCTTCCCCATCTTCTATGGCACCAAAGTCATGACCGCATCAACTGGAGACGAACACCCTCACATAATCCTCCAAGA...

Protein

Download Protein FASTA

285 aa · TkA03G413670|TK1151|PROTEIN

MMKVPDHQVAGHVAGAGKLGPLVDDSGRFYKPLQDGTRGIEEVSFYESFTSNSQIPQQIRKFFPIFYGTKVMTASTGDEHPHIILQDLVSSRTSPSLMDIKIGARTWAPEATEAYITKCMKKDRESTSVSLGYRISGLRAFIDDDLGFYKPERDVMRTASPDDVRMFLMKFVSSNPESESKPDCCLAKAVYGGDNGILSQLVELKTWFEGQTMYHFYACSVLFMFEKGLALKGDGQNAEVKLIDFAHVEEGKGVIDHNFL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G413670`
TK1151 ID	TkA03G413670
OH-1004 ID	LXL04_009258
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	99.600
Protein coverage (%)	TK1151 93.684 / OH-1004 56.568 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA03G413670

Location Chr03:102878396-102880369 (-)

Description Similar to IPK2a: Inositol polyphosphate multikinase alpha

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g61760`	Inositol phosphate kinase with a broad substrate specificity.	No verified direct reference in this release
`At5g07370`	Inositol phosphate kinase with a broad substrate specificity.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`UniProt: A2X5H5`	Inositol phosphate kinase with a broad substrate specificity.	No verified direct reference in this release
`Os02g0523800`	Inositol phosphate kinase with a broad substrate specificity.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_009258 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0009555 pollen development Biological Process

GO:0009749 response to glucose Biological Process

GO:0009793 embryo development ending in seed dormancy Biological Process

GO:0009846 pollen germination Biological Process

GO:0009860 pollen tube growth Biological Process

GO:0010183 pollen tube guidance Biological Process

GO:0010264 myo-inositol hexakisphosphate biosynthetic process Biological Process

GO:0010497 plasmodesmata-mediated intercellular transport Biological Process

GO:0032958 inositol phosphate biosynthetic process Biological Process

GO:2000280 regulation of root development Biological Process

GO:0005576 extracellular region Cellular Component

KEGG gene cross-reference

ath:AT5G07370

ath:AT5G61750

ath:AT5G61760

dosa:Os02g0523800

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.646

Rank 1 · TkA03G413670 · TK1151

Nucleus0.435

Rank 2 · TkA03G413670 · TK1151

Cell membrane0.097

Rank 3 · TkA03G413670 · TK1151

Mitochondrion0.064

Rank 4 · TkA03G413670 · TK1151

Endoplasmic reticulum0.061

Rank 5 · TkA03G413670 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03770IPK82-270 aa

PF07366SnoaL135-187 aa

PF07366SnoaL231-252 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G413670	`PF03770`	IPK	82	270	1.9e-43	149.3
TkA03G413670	`PF07366`	SnoaL	135	187	0.21	12.1
TkA03G413670	`PF07366`	SnoaL	231	252	0.21	12.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FLT2`	Arabidopsis thaliana	sp\|Q9FLT2\|IPMKB_ARATH Inositol polyphosphate multikinase beta	53.200%	Swiss-Prot	High
`Q9LY23`	Arabidopsis thaliana	sp\|Q9LY23\|IPMKA_ARATH Inositol polyphosphate multikinase alpha	53.500%	Swiss-Prot	High
`A2X5H5`	Oryza sativa subsp. indica	sp\|A2X5H5\|IPK2_ORYSI Inositol polyphosphate multikinase IPK2	47.400%	Swiss-Prot	Medium
`Q6H545`	Oryza sativa subsp. japonica	sp\|Q6H545\|IPK2_ORYSJ Inositol polyphosphate multikinase IPK2	47.400%	Swiss-Prot	Medium

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