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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G411380
Reference: TK1151 Chr: Chr03 Coordinates: 102309422-102311468 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1971 bp · TkA03G411380|TK1151|cDNA

ACCTTTTACCGTCTATTTCAGATTTGTGGCATAGTTCCATATTTCCATTTAAAACAGTTAAAGCAAGTGGCCGCCAGAACACACGTTTCCCTGACTGACGAGTTGAAGTGTACGAATCAAGGTAAATTCATCCCCTTGATGTTTTCTGCCTATCTTGCTCGCACAATTAAACAACATTCATCTCGTCTCTTCTTACCCTCTATTCTAAGATCACTAGCTTCCCAACATGATTTTTCGACTCCTTCCTATTTGTATTCAAC...

CDS

Download CDS FASTA

1776 bp · TkA03G411380|TK1151|CDS

ACCTTTTACCGTCTATTTCAGATTTGTGGCATAGTTCCATATTTCCATTTAAAACAGTTAAAGCAAGTGGCCGCCAGAACACACGTTTCCCTGACTGACGAGTTGAAGTGTACGAATCAAGGTAAATTCATCCCCTTGATGTTTTCTGCCTATCTTGCTCGCACAATTAAACAACATTCATCTCGTCTCTTCTTACCCTCTATTCTAAGATCACTAGCTTCCCAACATGATTTTTCGACTCCTTCCTATTTGTATTCAAC...

Protein

Download Protein FASTA

591 aa · TkA03G411380|TK1151|PROTEIN

TFYRLFQICGIVPYFHLKQLKQVAARTHVSLTDELKCTNQGKFIPLMFSAYLARTIKQHSSRLFLPSILRSLASQHDFSTPSYLYSTHSLSQAFHQTPGIRTPKLDYNHFSTLVPSYLSQTINFTEITENPDESTKSDVIKLITLLRSNIIPGGSESTDFLDESGIKPNEVLINSTIWALRDEWKLAFFVFRWGQKWRCNDEKAWNLMIWVLGNHKKFNNAWCLIRDLYQSSMNTQRSMLIMIDRYAAANEPSEAIRTFQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G411380
TK1151 IDTkA03G411380
OH-1004 IDLXL04_009226
Relationship / confidenceSequence Supported Annotation Or Model Conflict / Review
Protein identity (%)99.800
Protein coverage (%)TK1151 98.816 / OH-1004 41.894
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G411380
LocationChr03:102309422-102311468 (+)
DescriptionSimilar to At1g80880: Pentatricopeptide repeat-containing protein At1g80880, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g80880 Pentatricopeptide repeat-containing protein At1g80880, mitochondrial. No verified direct reference in this release
At3g15200 Putative pentatricopeptide repeat-containing protein At3g15200. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_009226 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006310 DNA recombination Biological Process
GO:0006508 proteolysis Biological Process
GO:0015074 DNA integration Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0003676 nucleic acid binding Molecular Function
GO:0003964 RNA-directed DNA polymerase activity Molecular Function
GO:0004190 aspartic-type endopeptidase activity Molecular Function
GO:0004519 endonuclease activity Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT1G80880
ath:AT5G15010
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.764
Rank 1 · TkA03G411380 · TK1151
Plastid0.129
Rank 2 · TkA03G411380 · TK1151
Nucleus0.077
Rank 3 · TkA03G411380 · TK1151
Cytoplasm0.040
Rank 4 · TkA03G411380 · TK1151
Cell membrane0.011
Rank 5 · TkA03G411380 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13762MNE142-114 aa
PF13812PPR_3163-172 aa
PF13041PPR_2164-171 aa
PF12854PPR_1165-171 aa
PF23276TPR_24195-233 aa
PF13041PPR_2201-229 aa
PF18662HTH_56201-220 aa
PF28774DUF8457201-236 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G411380PF13762MNE1421140.1412.9
TkA03G411380PF13812PPR_31631724.4e-2278.7
TkA03G411380PF13041PPR_21641712.6e-42143.4
TkA03G411380PF12854PPR_11651716.2e-2174.5
TkA03G411380PF23276TPR_241952335.4e-1762.7
TkA03G411380PF13041PPR_22012292.6e-42143.4
TkA03G411380PF18662HTH_562012200.212.3
TkA03G411380PF28774DUF84572012362.39.3
TkA03G411380PF01535PPR2042271.4e-30104.0
TkA03G411380PF29070MSC6_N2133567.5e-1349.0
TkA03G411380PF13041PPR_22412832.6e-42143.4
TkA03G411380PF01535PPR2412651.4e-30104.0
TkA03G411380PF12854PPR_12412636.2e-2174.5
TkA03G411380PF24760TPR_IF140_C2412600.2212.6
TkA03G411380PF23276TPR_242422905.4e-1762.7
TkA03G411380PF17177PPR_long2462913.2e-1350.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SAH2Arabidopsis thalianasp|Q9SAH2|PP137_ARATH Pentatricopeptide repeat-containing protein At1g80880, mitochondrial52.700%Swiss-ProtHigh
Q9LIL5Arabidopsis thalianasp|Q9LIL5|PP233_ARATH Putative pentatricopeptide repeat-containing protein At3g1520037.800%Swiss-ProtMedium

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