TkA03G405620 | RubberDandelionOmics

Gene overview

TkA03G405620

Reference: TK1151 Chr: Chr03 Coordinates: 100875812-100879080 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2694 bp · TkA03G405620|TK1151|cDNA

CGATTTCTTAACCTGCAAAACCCTAAAATTACCCATTTTACGTTTCTTACCATTTTCTCCCGACTATAAATACAAACTACTTCCCCATCAATATTGTCACTTCTACTCTTTCATTCGTTCGTCTACCGGAGGGAGGGTTTATAAGTTTCCGGTAATATGAGTTCGGTGTTGCTATCAGATCTGGCAACGGAAATTATTATTCCGGTATGTGCTGTGATTGGTATCGTTTTTTCTCTGATCCAATGGGCGTTGGTGTCAAG...

CDS

Download CDS FASTA

2298 bp · TkA03G405620|TK1151|CDS

ATGAGTTCGGTGTTGCTATCAGATCTGGCAACGGAAATTATTATTCCGGTATGTGCTGTGATTGGTATCGTTTTTTCTCTGATCCAATGGGCGTTGGTGTCAAGAGTAAAGCTCACTCCGGACCGTAACGGTTCCCCGGCAAACAGCAACAAGAATGGGTACAATGATTCCTTAATCGAAGAAGAGGAGGGCGTTAACGAACATAACGTCGTCGCAAAATGCGCTGAGATTCAGAATGCCATCTCTGAAGGAGCAACATC...

Protein

Download Protein FASTA

765 aa · TkA03G405620|TK1151|PROTEIN

MSSVLLSDLATEIIIPVCAVIGIVFSLIQWALVSRVKLTPDRNGSPANSNKNGYNDSLIEEEEGVNEHNVVAKCAEIQNAISEGATSFLLTEYQYVGIFMVVFAILIFLFLGSVEGFSTKSKQCTYNIHSMCKPAIATALFSTIAFVLGAITSVLSGFLGMKIATYANARTTLEARKGVGKAFITAFRSGAVMGFLLAANGLLVLYITINLFKLYYGDDWEGLFEAITGYGLGGSSMALFGRVGGGIYTKAADVGADLVG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G405620`
TK1151 ID	TkA03G405620
OH-1004 ID	LXL04_009179
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA03G405620

Location Chr03:100875812-100879080 (+)

Description Similar to Pyrophosphate-energized vacuolar membrane proton pump

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g15690`	May contribute to the H⁺ electrochemical gradient across the tonoplast from the cytosol to the vacuolar lumen.	Arabidopsis H+-PPase AVP1 regulates auxin-mediated organ development.2005 · DOI: 10.1126/science.1115711

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_009179 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0005985 sucrose metabolic process Biological Process

GO:0006814 sodium ion transport Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0009651 response to salt stress Biological Process

GO:0009926 auxin polar transport Biological Process

GO:0010248 establishment or maintenance of transmembrane electrochemical gradient Biological Process

GO:0010581 regulation of starch biosynthetic process Biological Process

GO:0048366 leaf development Biological Process

GO:0052546 cell wall pectin metabolic process Biological Process

GO:0055085 transmembrane transport Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005576 extracellular region Cellular Component

KEGG gene cross-reference

ath:AT1G15690

lic:LIC_12285

lil:LA_1471

vra:106768298

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.383

Rank 1 · TkA03G405620 · TK1151

Cell membrane0.231

Rank 2 · TkA03G405620 · TK1151

Endoplasmic reticulum0.220

Rank 3 · TkA03G405620 · TK1151

Cytoplasm0.151

Rank 4 · TkA03G405620 · TK1151

Golgi apparatus0.120

Rank 5 · TkA03G405620 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03030H_PPase59-751 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G405620	`PF03030`	H_PPase	59	751	8.6e-257	854.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`P31414`	Arabidopsis thaliana	sp\|P31414\|AVP1_ARATH Pyrophosphate-energized vacuolar membrane proton pump 1	89.100%	Swiss-Prot	High

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