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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G398880
Reference: TK1151 Chr: Chr03 Coordinates: 99133088-99137471 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2719 bp · TkA03G398880|TK1151|cDNA

TTCATATTCATTCAAGATTCCTTCCCTATTGTTGTTACCACACGTATTACTAACAGTGTCAGTAATTTGACTAATTTCGAGTTTATTTATACTTTTGGTGGGTGACAGTAATATAAGATAGAATGAAGGGTATGTAATTTTGTATAATATATACCGTATCTAGATCAAGAAAGTAGAGTATATTTCTATGGCTTTGGATTCTTAGAGGCGTACAAAGATCGTGCCTGCCAGCTTTTTCCAAGAATGAAAAATGGAATATT...

CDS

Download CDS FASTA

2142 bp · TkA03G398880|TK1151|CDS

ATGAGGGTGTACACTCCATTGTTGTTCGTGTTTCTTGTTTTGGGTCCGAGCTCCATTAATGGCGACACAGATCCAAATGACGCATCTGCCCTCAGGGTTATGTATCAAAGTCTAAATTCACCTGGGCAATTGACCAAATGGACCGCAAATGGTGGCGATCCATGTGGAGAGAATTGGAAAGGGGTTACCTGTTCAGGTTCAAGAGTCACTGAAATAAATATACCAAGTCTCGGGTTATCTGGTAATCTGGGATACCAGCT...

Protein

Download Protein FASTA

713 aa · TkA03G398880|TK1151|PROTEIN

MRVYTPLLFVFLVLGPSSINGDTDPNDASALRVMYQSLNSPGQLTKWTANGGDPCGENWKGVTCSGSRVTEINIPSLGLSGNLGYQLTSLTSLNSFDISNNNLGNQLPYNLPPNLQRLNIAGCGFSGSLPYSISLMKPLKYLNAAHNQLNGELTDMFSTLPSLSTLDLSFNTLTGELPESFSSLSSATNMYLQNNQFTGTIDVLGDLPLKTLNVANNKFTGWVPSRLKNINLQKDGNSWNSGNAPPPPPGTPASGSGNRN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G398880
TK1151 IDTkA03G398880
OH-1004 IDLXL04_009115
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.900
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G398880
LocationChr03:99133088-99137471 (-)
DescriptionSimilar to SRF7: Protein STRUBBELIG-RECEPTOR FAMILY 7
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g14350 Protein STRUBBELIG-RECEPTOR FAMILY 7. No verified direct reference in this release
At1g53730 Protein STRUBBELIG-RECEPTOR FAMILY 6. No verified direct reference in this release
At4g22130 Protein STRUBBELIG-RECEPTOR FAMILY 8. No verified direct reference in this release
At1g78980 Protein STRUBBELIG-RECEPTOR FAMILY 5. No verified direct reference in this release
At2g20850 Not essential for epidermal patterning and not redundant with STRUBBELIG.
The role of the SCRAMBLED receptor-like kinase in patterning the Arabidopsis root epidermis.2007 · DOI: 10.1016/j.ydbio.2006.09.009
Molecular characterisation of the STRUBBELIG-RECEPTOR FAMILY of genes encoding putative leucine-rich repeat receptor-like kinases in Arabidopsis thaliana.2007 · DOI: 10.1186/1471-2229-7-16

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_009115 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0007165 signal transduction Biological Process
GO:0005576 extracellular region Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0004672 protein kinase activity Molecular Function
GO:0005524 ATP binding Molecular Function
KEGG gene cross-reference
ath:AT1G53730
ath:AT1G78980
ath:AT3G13065
ath:AT3G14350
ath:AT4G22130
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.859
Rank 1 · TkA03G398880 · TK1151
Cytoplasm0.081
Rank 2 · TkA03G398880 · TK1151
Endoplasmic reticulum0.073
Rank 3 · TkA03G398880 · TK1151
Nucleus0.056
Rank 4 · TkA03G398880 · TK1151
Lysosome / Vacuole0.027
Rank 5 · TkA03G398880 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08263LRRNT_225-65 aa
PF23952LRR_EndoS69-101 aa
PF23598LRR_1484-182 aa
PF12799LRR_487-103 aa
PF25013LRR_Zer-187-177 aa
PF13855LRR_888-104 aa
PF13516LRR_690-105 aa
PF12799LRR_491-123 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G398880PF08263LRRNT_225654e-1040.5
TkA03G398880PF23952LRR_EndoS691010.1513.0
TkA03G398880PF23598LRR_14841821.2e-0525.0
TkA03G398880PF12799LRR_4871032.1e-0628.5
TkA03G398880PF25013LRR_Zer-1871770.01316.4
TkA03G398880PF13855LRR_8881045.2e-0936.5
TkA03G398880PF13516LRR_6901057.6e-0523.2
TkA03G398880PF12799LRR_4911232.1e-0628.5
TkA03G398880PF00560LRR_1921112.8e-1347.9
TkA03G398880PF13855LRR_81131735.2e-0936.5
TkA03G398880PF12799LRR_41131492.1e-0628.5
TkA03G398880PF13516LRR_61131267.6e-0523.2
TkA03G398880PF00560LRR_11141342.8e-1347.9
TkA03G398880PF24141LRR_ComC1272020.1212.7
TkA03G398880PF23952LRR_EndoS1331710.1513.0
TkA03G398880PF00560LRR_11391602.8e-1347.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LUL4Arabidopsis thalianasp|Q9LUL4|SRF7_ARATH Protein STRUBBELIG-RECEPTOR FAMILY 763.200%Swiss-ProtHigh
Q9C8M9Arabidopsis thalianasp|Q9C8M9|SRF6_ARATH Protein STRUBBELIG-RECEPTOR FAMILY 664.100%Swiss-ProtHigh
Q6R2J8Arabidopsis thalianasp|Q6R2J8|SRF8_ARATH Protein STRUBBELIG-RECEPTOR FAMILY 852.900%Swiss-ProtHigh
Q6R2K1Arabidopsis thalianasp|Q6R2K1|SRF5_ARATH Protein STRUBBELIG-RECEPTOR FAMILY 547.400%Swiss-ProtMedium
Q06BH3Arabidopsis thalianasp|Q06BH3|SRF1_ARATH Protein STRUBBELIG-RECEPTOR FAMILY 140.700%Swiss-ProtMedium

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