Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1830 bp · TkA03G396480|TK1151|cDNA
AATCGGGCCGCATGTCGGAGTTTTTGAAAGCGCAAGCAGACGTTTGATGGTGGTCGCGGTTCTCTGAGTCTCTCCAAATGCGGAAATTCGTAGGTGAAAGAGCAAAACGGTTGATCACCAAGAACACGATCGCTCCCTTGGTGACATTGATCATGGCTTCAAAGGGAGCATCACCTCCTATTACTGTTGAATCGCTCAACCCTCAGGTATTGAAATGTGAATATGCTGTTCGTGGTGAGATTGTTTCTATAGCTCAGAAA...
1647 bp · TkA03G396480|TK1151|CDS
ATGCGGAAATTCGTAGGTGAAAGAGCAAAACGGTTGATCACCAAGAACACGATCGCTCCCTTGGTGACATTGAGTAATTGTCAAACCACATCCACGCTTTCTTCTTCAAATTATTGCTGTAATAGATCACATCTCCCCCGATTACCCTCATCGCTGAATTTTCCCCTTCGTTGTTACTCAGTCATGGCTTCAAAGGGAGCATCACCTCCTATTACTGTTGAATCGCTCAACCCTCAGGTATTGAAATGTGAATATGCTGT...
Protein
Download Protein FASTA548 aa · TkA03G396480|TK1151|PROTEIN
MRKFVGERAKRLITKNTIAPLVTLSNCQTTSTLSSSNYCCNRSHLPRLPSSLNFPLRCYSVMASKGASPPITVESLNPQVLKCEYAVRGEIVSIAQKLQQDLQKNPGSKSFDEILFCNIGNPQALGQKPITFFREVLALCDHPSLLDKRETNSLFSSDSIARALKILDQMPGRATGAYSHSQGIAGLRDTIAAGIEARDGYPSDANDIFLTDGASPGVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVRYYLD...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA03G396480 |
|---|---|
| TK1151 ID | TkA03G396480 |
| OH-1004 ID | LXL04_009077 |
| Relationship / confidence | Multi Source To Oh1004 / Complex relationship |
| Protein identity (%) | 99.600 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA03G396480 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr03:98539110-98542259 (-) | |||||||||
| Description | Similar to ALAAT2: Alanine aminotransferase 2, mitochondrial | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0001666 response to hypoxia Biological Process GO:0019481 L-alanine catabolic process, by transamination Biological Process GO:0042853 L-alanine catabolic process Biological Process GO:0046686 response to cadmium ion Biological Process GO:0071456 cellular response to hypoxia Biological Process GO:0005634 nucleus Cellular Component GO:0005739 mitochondrion Cellular Component GO:0005759 mitochondrial matrix Cellular Component GO:0004021 L-alanine:2-oxoglutarate aminotransferase activity Molecular Function GO:0005507 copper ion binding Molecular Function GO:0005524 ATP binding Molecular Function GO:0030170 pyridoxal phosphate binding Molecular Function | |||||||||
| KEGG gene cross-reference | ath:AT1G17290 ath:AT1G72330 ddi:DDB_G0285899 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF05209MinC_N93-107 aaPF00155Aminotran_1_296-123 aaPF00155Aminotran_1_2171-527 aaPF12897Asp_aminotransf232-361 aaPF01212Beta_elim_lyase267-324 aaPF05209MinC_N270-321 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA03G396480 | PF05209 | MinC_N | 93 | 107 | 0.13 | 13.1 |
| TkA03G396480 | PF00155 | Aminotran_1_2 | 96 | 123 | 8.9e-39 | 134.4 |
| TkA03G396480 | PF00155 | Aminotran_1_2 | 171 | 527 | 8.9e-39 | 134.4 |
| TkA03G396480 | PF12897 | Asp_aminotransf | 232 | 361 | 0.057 | 13.0 |
| TkA03G396480 | PF01212 | Beta_elim_lyase | 267 | 324 | 0.16 | 12.0 |
| TkA03G396480 | PF05209 | MinC_N | 270 | 321 | 0.13 | 13.1 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.