TkA03G394650 | RubberDandelionOmics

Gene overview

TkA03G394650

Reference: TK1151 Chr: Chr03 Coordinates: 98006403-98011675 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1401 bp · TkA03G394650|TK1151|cDNA

ATGGTTACAAATACCGAAAGAAAAAAAGGTGAATCAGATAATGAACTCAGTCTTACTGATAGTCATAAACTGTCGACTCCTAGTAAGAGTTATATACAGGAGTCGGATTTTAGTAAAGATTATGAAGAAGAAGAAGATGAACGAGAACCTGCAAAAACCATTGGGGTATTTGGGTTGTTTAAGTATTCAACAAAACTGGATGTTTTTCTTGTGATAATAGGCAGTGTGGGTGCTTTGATCAATGGAGGAGCACTACCTTG...

CDS

Download CDS FASTA

1401 bp · TkA03G394650|TK1151|CDS

ATGGTTACAAATACCGAAAGAAAAAAAGGTGAATCAGATAATGAACTCAGTCTTACTGATAGTCATAAACTGTCGACTCCTAGTAAGAGTTATATACAGGAGTCGGATTTTAGTAAAGATTATGAAGAAGAAGAAGATGAACGAGAACCTGCAAAAACCATTGGGGTATTTGGGTTGTTTAAGTATTCAACAAAACTGGATGTTTTTCTTGTGATAATAGGCAGTGTGGGTGCTTTGATCAATGGAGGAGCACTACCTTG...

Protein

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466 aa · TkA03G394650|TK1151|PROTEIN

MVTNTERKKGESDNELSLTDSHKLSTPSKSYIQESDFSKDYEEEEDEREPAKTIGVFGLFKYSTKLDVFLVIIGSVGALINGGALPWYSFLLGKFVNKIALDDDNDQMMKDVKRICLFMAALSGLVMIGAYLQIACWRLVGERAAHRIRTAYLRSVLRQDVAFFDTEISTSEIMHGISSDVAQIQEVMGEKMAHFVHHICTFICGYTVGFIRSWKVSLAVLAVTPLTMFCGMAYKAVYVGLATKEVDSYKKAGGVAEQAI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G394650`
TK1151 ID	TkA03G394650
OH-1004 ID	LXL04_009047
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	88.100
Protein coverage (%)	TK1151 96.781 / OH-1004 31.075 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA03G394650

Location Chr03:98006403-98011675 (-)

Description Similar to ABCB19: ABC transporter B family member 19

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g28860`	May participate in brassinosteroid export and related signaling.	TWISTED DWARF1, a unique plasma membrane-anchored immunophilin-like protein, interacts with Arabidopsis multidrug resistance-like transporters AtPGP1 and AtPGP19.2003 · DOI: 10.1091/mbc.e02-10-0698 Connective auxin transport contributes to strigolactone-mediated shoot branching control independent of the transcription factor BRC1.2019 · DOI: 10.1371/journal.pgen.1008023 An ATP-Binding Cassette Transporter, ABCB19, Regulates Leaf Position and Morphology during Phototropin1-Mediated Blue Light Responses.2020 · DOI: 10.1104/pp.20.00223 Arabidopsis TWISTED DWARF1 regulates stamen elongation by differential activation of ABCB1,19-mediated auxin transport.2022 · DOI: 10.1093/jxb/erac185 Loss of Multiple ABCB Auxin Transporters Recapitulates the Major twisted dwarf 1 Phenotypes in Arabidopsis thaliana .2022 · DOI: 10.3389/fpls.2022.840260 Structure and function of the <i>Arabidopsis</i> ABC transporter ABCB19 in brassinosteroid export.2024 · DOI: 10.1126/science.adj4591 ABCB19 transporter: fostering brassinosteroid transport through membrane flexibility.2024 · DOI: 10.1016/j.tplants.2024.06.005 Structural insights into brassinosteroid export mediated by the Arabidopsis ABC transporter ABCB1.2025 · DOI: 10.1016/j.xplc.2024.101181 Quantitative analysis of the root posture of Arabidopsis thaliana mutants with wavy roots.2024 · DOI: 10.1017/qpb.2024.12
`At2g36910`	May participate in brassinosteroid export and related signaling.	Arabidopsis TWISTED DWARF1 regulates stamen elongation by differential activation of ABCB1,19-mediated auxin transport.2022 · DOI: 10.1093/jxb/erac185 Loss of Multiple ABCB Auxin Transporters Recapitulates the Major twisted dwarf 1 Phenotypes in Arabidopsis thaliana .2022 · DOI: 10.3389/fpls.2022.840260 Structure and function of the <i>Arabidopsis</i> ABC transporter ABCB19 in brassinosteroid export.2024 · DOI: 10.1126/science.adj4591 Structural insights into brassinosteroid export mediated by the Arabidopsis ABC transporter ABCB1.2025 · DOI: 10.1016/j.xplc.2024.101181
`At4g01830`	ABC transporter B family member 5.	No verified direct reference in this release
`At4g01820`	ABC transporter B family member 3.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_009047 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0008361 regulation of cell size Biological Process

GO:0009555 pollen development Biological Process

GO:0009624 response to nematode Biological Process

GO:0009637 response to blue light Biological Process

GO:0009639 response to red or far red light Biological Process

GO:0009640 photomorphogenesis Biological Process

GO:0009733 response to auxin Biological Process

GO:0009734 auxin-activated signaling pathway Biological Process

GO:0009741 response to brassinosteroid Biological Process

GO:0009742 brassinosteroid mediated signaling pathway Biological Process

GO:0009926 auxin polar transport Biological Process

GO:0009958 positive gravitropism Biological Process

KEGG gene cross-reference

ath:AT2G36910

ath:AT3G28860

ath:AT4G25960

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.580

Rank 1 · TkA03G394650 · TK1151

Lysosome / Vacuole0.203

Rank 2 · TkA03G394650 · TK1151

Endoplasmic reticulum0.117

Rank 3 · TkA03G394650 · TK1151

Cytoplasm0.105

Rank 4 · TkA03G394650 · TK1151

Golgi apparatus0.057

Rank 5 · TkA03G394650 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00664ABC_membrane72-341 aa

PF13604AAA_30145-160 aa

PF00005ABC_tran412-454 aa

PF13604AAA_30421-452 aa

PF13401AAA_22422-449 aa

PF13555AAA_29422-439 aa

PF03193RsgA_GTPase422-442 aa

PF13304AAA_21426-445 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G394650	`PF00664`	ABC_membrane	72	341	2.6e-57	195.3
TkA03G394650	`PF13604`	AAA_30	145	160	0.28	11.6
TkA03G394650	`PF00005`	ABC_tran	412	454	7.4e-08	33.8
TkA03G394650	`PF13604`	AAA_30	421	452	0.28	11.6
TkA03G394650	`PF13401`	AAA_22	422	449	0.038	15.0
TkA03G394650	`PF13555`	AAA_29	422	439	0.043	14.3
TkA03G394650	`PF03193`	RsgA_GTPase	422	442	0.16	12.5
TkA03G394650	`PF13304`	AAA_21	426	445	0.26	11.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LJX0`	Arabidopsis thaliana	sp\|Q9LJX0\|AB19B_ARATH ABC transporter B family member 19	37.900%	Swiss-Prot	Medium
`Q9ZR72`	Arabidopsis thaliana	sp\|Q9ZR72\|AB1B_ARATH ABC transporter B family member 1	37.800%	Swiss-Prot	Medium
`Q9SYI3`	Arabidopsis thaliana	sp\|Q9SYI3\|AB5B_ARATH ABC transporter B family member 5	38.100%	Swiss-Prot	Medium
`Q9SYI2`	Arabidopsis thaliana	sp\|Q9SYI2\|AB3B_ARATH ABC transporter B family member 3	37.600%	Swiss-Prot	Medium

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