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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G390520
Reference: TK1151 Chr: Chr03 Coordinates: 96787124-96811319 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

16616 bp · TkA03G390520|TK1151|cDNA

AAAAATCTTAAACCCTCTTAAACCCTACATCCATCGCTGCTTCTTCCTCGCTGCTTCACGACCTCCATAGCTGCTGCACGCCTGGTTCCGTTTCGCTGCTACCTTCTTCTTCACCCGTTCGCTGCTTCACTGGTTCTTTACCCCTTCGTCCTCCTCGGTTCGCTGCTTCATTGCTGAAAAAGTTCCGGGGAAAAGTTCGAGCTAAGCAGGTACAAGTCTAAATGGCGATTGATGGGAGTTTTTGTGTTCAATATGAGCTG...

CDS

Download CDS FASTA

11178 bp · TkA03G390520|TK1151|CDS

ATGGCGATTGATGGGAGTTTTTGTGTTCAATATGAGCTGGAAAGGTTTCTTTACCGGTGTCCCAAGCTCATGGCTGCTCCCCAGTTAGATAATCTAGTCAAGAAGGGGAAAGAATTGACAGAGGAAGAGTTGATTGTAGGAGTAGCTGAGTTACTTTTACATCCGCGCTATACAATCCCATTAGTGGGATGCTTTCGCCCAATTGCACGGAAAATTGTTGACCGAGTTGTTGCTTTGCTACATTTGGTGCCTGATTTGAC...

Protein

Download Protein FASTA

3725 aa · TkA03G390520|TK1151|PROTEIN

MAIDGSFCVQYELERFLYRCPKLMAAPQLDNLVKKGKELTEEELIVGVAELLLHPRYTIPLVGCFRPIARKIVDRVVALLHLVPDLTSNSNDSMLEFDEGRLFKETETLDYEQDISVINLYARYGRGLALHELSCLAFSRTLDMLPYLSGSVRDYFKFAPPPFKRIMEKESMTQSLLQSGTQLLDAVRVSYRLLLAEPEVFARLWDWSCYMDLIHEITGINGADTELFMDIRWCTVQTLTMVLGMSDKFIRKSKTSDMVP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G390520
TK1151 IDTkA03G390520
OH-1004 IDLXL04_008247
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)98.000
Protein coverage (%)TK1151 99.946 / OH-1004 69.434
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G390520
LocationChr03:96787124-96811319 (+)
DescriptionSimilar to MDN1: Midasin
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g67120 Nuclear chaperone required for maturation and nuclear export of pre-60S ribosome subunits.
The MIDASIN and NOTCHLESS genes are essential for female gametophyte development in Arabidopsis thaliana.2010 · DOI: 10.1007/s12298-010-0005-y
The Mutation of Glu at Amino Acid 3838 of AtMDN1 Provokes Pleiotropic Developmental Phenotypes in Arabidopsis.2016 · DOI: 10.1038/srep36446

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_008247 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000027 ribosomal large subunit assembly Biological Process
GO:0009553 embryo sac development Biological Process
GO:0009738 abscisic acid-activated signaling pathway Biological Process
GO:0048638 regulation of developmental growth Biological Process
GO:0005634 nucleus Cellular Component
GO:0005654 nucleoplasm Cellular Component
GO:0005730 nucleolus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0009506 plasmodesma Cellular Component
GO:0009941 chloroplast envelope Cellular Component
GO:0005524 ATP binding Molecular Function
GO:0016887 ATP hydrolysis activity Molecular Function
KEGG gene cross-reference
ath:AT1G67120
ddi:DDB_G0295765
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.378
Rank 1 · TkA03G390520 · TK1151
Mitochondrion0.310
Rank 2 · TkA03G390520 · TK1151
Nucleus0.290
Rank 3 · TkA03G390520 · TK1151
Peroxisome0.059
Rank 4 · TkA03G390520 · TK1151
Cell membrane0.045
Rank 5 · TkA03G390520 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03193RsgA_GTPase326-384 aa
PF25199nSTAND_NTPase5327-372 aa
PF12774AAA_6328-395 aa
PF05496RuvB_N331-378 aa
PF12775AAA_7332-376 aa
PF05272VapE-like_dom333-373 aa
PF30683AAA_RNF213_4334-373 aa
PF00158Sigma54_activat335-459 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G390520PF03193RsgA_GTPase3263849.8e-0832.7
TkA03G390520PF25199nSTAND_NTPase53273725.9e-0626.9
TkA03G390520PF12774AAA_63283951.6e-29103.7
TkA03G390520PF05496RuvB_N3313784.5e-1246.7
TkA03G390520PF12775AAA_73323768.9e-29101.0
TkA03G390520PF05272VapE-like_dom3333730.0005620.2
TkA03G390520PF30683AAA_RNF213_43343730.001519.2
TkA03G390520PF00158Sigma54_activat3354597.7e-1865.5
TkA03G390520PF03215Rad173363791e-0939.3
TkA03G390520PF20720nSTAND33393731.8e-1867.4
TkA03G390520PF02463SMC_N3393690.0215.0
TkA03G390520PF20030bpMoxR3413772.1e-1453.8
TkA03G390520PF04851ResIII3423723.3e-0524.6
TkA03G390520PF01078Mg_chelatase3433721.1e-1042.0
TkA03G390520PF20703nSTAND13433680.000620.3
TkA03G390520PF30694AAA_RNF213_33443732.2e-0938.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
A0A1P8AUY4Arabidopsis thalianasp|A0A1P8AUY4|MDN1_ARATH Midasin49.500%Swiss-ProtMedium

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