TkA03G358090 | RubberDandelionOmics

Gene overview

TkA03G358090

Reference: TK1151 Chr: Chr03 Coordinates: 88329863-88332773 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2338 bp · TkA03G358090|TK1151|cDNA

GGAACAGTTTTTGTATATTTATCGGTGCAACAAAATATTTGTGAACTACAAACTCTCTATTGCCGAGAAAGGGTGGGTAATGAAACACATCCGAGGGTTTATGTTGCAGGGCTGGTGGGAGGGTTTTAGGCCGATGTCCACACTCACGGTTGCTGTAGCAGATATGCAGCCTTCAACGCTGTTTCACGGTCCAAGAAATTGGATGCTATTACCGGGTGATTTACCTCGTCATCTCCGTCGACGTTTCTTATCATCATCAC...

CDS

Download CDS FASTA

1893 bp · TkA03G358090|TK1151|CDS

ATGAAACACATCCGAGGGTTTATGTTGCAGGGCTGGTGGGAGGGTTTTAGGCCGATGTCCACACTCACGGTTGCTGTAGCAGATATGCAGCCTTCAACGCTGTTTCACGGTCCAAGAAATTGGATGCTATTACCGGGTGATTTACCTCGTCATCTCCGTCGACGTTTCTTATCATCATCACCAATTCATTTGCAAGACAGTGATCCGGTTTGCCGTTGGTTGCAAAACAGATGCGTTGTTGCTTATTTTCACGACGATTC...

Protein

Download Protein FASTA

630 aa · TkA03G358090|TK1151|PROTEIN

MKHIRGFMLQGWWEGFRPMSTLTVAVADMQPSTLFHGPRNWMLLPGDLPRHLRRRFLSSSPIHLQDSDPVCRWLQNRCVVAYFHDDSRRPQRRPLSSSSSSSTPVADEGYEDEQHKQAAREAVSEILQENGVSEEESVDIAMKSPKYIEMLMDSVRDLDELFQSATTSSSTTSSSSISSYKKKVFDMGKQKGDKGLVPLLESMVGLPLPSAMHIARYLSSHTAPNLLHKIKYLKQILFSDIDGKAPIAKNARRMMMHLSV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G358090`
TK1151 ID	TkA03G358090
OH-1004 ID	LXL04_010514
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	40.900
Protein coverage (%)	TK1151 9.841 / OH-1004 12.941 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA03G358090

Location Chr03:88329863-88332773 (-)

Description Similar to MTERF4: Transcription termination factor MTERF4, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g21710`	Transcription termination factor involved in processing of plastid transcripts (By similarity).	No verified direct reference in this release
`At2g03050`	Transcription termination factor required for plastid- specific rRNA accumulation and protein synthesis in plastids.	A mutation in the Arabidopsis mTERF-related plastid protein SOLDAT10 activates retrograde signaling and suppresses (1)O(2)-induced cell death.2009 · DOI: 10.1111/j.1365-313x.2009.03965.x
`At4g02990`	Transcription termination factor required for processing and steady-state levels of plastid transcripts.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_010514 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006353 DNA-templated transcription termination Biological Process

GO:0008380 RNA splicing Biological Process

GO:0009793 embryo development ending in seed dormancy Biological Process

GO:0032502 developmental process Biological Process

GO:0042254 ribosome biogenesis Biological Process

GO:0042793 plastid transcription Biological Process

GO:0042794 plastid rRNA transcription Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009536 plastid Cellular Component

GO:0009570 chloroplast stroma Cellular Component

KEGG gene cross-reference

ath:AT2G21710

ath:AT4G02990

dosa:Os05g0404000

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.597

Rank 1 · TkA03G358090 · TK1151

Plastid0.321

Rank 2 · TkA03G358090 · TK1151

Nucleus0.061

Rank 3 · TkA03G358090 · TK1151

Cytoplasm0.031

Rank 4 · TkA03G358090 · TK1151

Cell membrane0.014

Rank 5 · TkA03G358090 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF09074Mer299-187 aa

PF02536mTERF125-278 aa

PF09074Mer2224-270 aa

PF02536mTERF284-320 aa

PF02536mTERF316-624 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G358090	`PF09074`	Mer2	99	187	2.8	8.4
TkA03G358090	`PF02536`	mTERF	125	278	1.4e-106	356.7
TkA03G358090	`PF09074`	Mer2	224	270	2.8	8.4
TkA03G358090	`PF02536`	mTERF	284	320	1.4e-106	356.7
TkA03G358090	`PF02536`	mTERF	316	624	1.4e-106	356.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`F4IHL3`	Arabidopsis thaliana	sp\|F4IHL3\|MTEF2_ARATH Transcription termination factor MTERF2, chloroplastic	45.600%	Swiss-Prot	Low
`Q84X53`	Arabidopsis thaliana	sp\|Q84X53\|MTEF1_ARATH Transcription termination factor MTEF1, chloroplastic	27.200%	Swiss-Prot	Low
`Q9ZT96`	Arabidopsis thaliana	sp\|Q9ZT96\|MTEF4_ARATH Transcription termination factor MTERF4, chloroplastic	40.400%	Swiss-Prot	Low

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